Query= MSMg01no349_f23.b1 MSMg01no349_f23.b1 CHROMAT_FILE:
MSMg01no349_f23.b1 PHD_FILE: MSMg01no349_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:58 2005
(511 letters)
>mm_chr9_29807719_29808629
Length = 911
Score = 870 bits (450), Expect = 0.0
Identities = 502/538 (93%), Gaps = 30/538 (5%)
Strand = Plus / Plus
Query: 4 ggaattcttaagaatgtgacaaggagagatgaaagatctacttagaaaatttgtgactcc 63
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 ggaattcttaagaatgtgagaaggagagatgaaagatctacttagaaaatttgtgactcc 233
Query: 64 ttaattatagttgtaactttcctctctgcatgcatacctgctccttgatctctgtcatgt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 ttaattatagttgtaactttcctctctgcatgcatacctgctccttgatctctgtcatgt 293
Query: 124 agctcggtattagaaagaagggtatgatgtacaaacatgtttcacctcatacattatctt 183
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 agcttggtattagaaagaaaggtatgatgtacaaacatgtttcacctcatacattatctt 353
Query: 184 tgttatatccaagtgatgtattaagaataagctctagaataaaaggatgggaagccagaa 243
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 354 tgttatatccaagtgatgtattaaggataagctctagaataaaaggatgggaagccagaa 413
Query: 244 ctgggaagagatgccctgggaa---------------------------gaag---ttaa 273
|||||||||||||||||||||| |||| ||||
Sbjct: 414 ctgggaagagatgccctgggaagagatgccctgggaagagatgccctgggaagaaattaa 473
Query: 274 caaagaatctgaagattctttttacaactgtgctttccaagagagctgagttgtatactc 333
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 caaagaatctgaagtttctttttacaactgtgctttccaagagagctgagttgtatactc 533
Query: 334 caacatcccttagtcattttcatgcatagctgtccaggggaaagtgagtgtgtaggtgtc 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 caacatcccttagtcattttcatgcatagctgtccaggggaaagtgagtgtgtaggtgtc 593
Query: 394 atttaaaaagtgacatgcctctgattgctagctgtgcttgatacagctctaacaaagtcc 453
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 594 atttaaaaagtgacatgcctctgagtgctagctgtgcttgatacagctctaacaaagtcc 653
Query: 454 tacaggtccatgggcaacgaatgtgccataattgaagtttaaacaccattgggggagt 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tacaggtccatgggcaacgaatgtgccataattgaagtttaaacaccattgggggagt 711
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no349_f23.g1 MSMg01no349_f23.g1 CHROMAT_FILE:
MSMg01no349_f23.g1 PHD_FILE: MSMg01no349_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:58 2005
(415 letters)
>mm_chr9_29990771_29991587
Length = 817
Score = 727 bits (376), Expect = 0.0
Identities = 407/418 (97%), Gaps = 4/418 (0%)
Strand = Plus / Minus
Query: 1 tctctgccgactgcagagtatcccgtgttcaaacaaagacgatgaaagacctgcctattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tctctgccgactgcagagtatcccgtgttcaaacaaagacgatgaaagacctgcctattt 558
Query: 61 ccagccctgtcttggagattggctagtgggcttgaaacacccgcttttgaaaggtcggca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ccagccctgtcttggagattggctagtgggcttgaaacacccgcttttgaaaggtcggca 498
Query: 121 agctttggagaaatattattcatgctgagtaggacaatgcaaattgcctggcatctggaa 180
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 497 agctttggagaaatattattcatgctgagcaggacaatgcaaattgcccggcatctggaa 438
Query: 181 taaatcgctgtctggatacctgaactgaagcggagcaagcaaagactgccaatgggaaaa 240
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 437 taaatcgctgtctggatacctgaaccgaagcggagcaagcaaagactgccaacgggaaaa 378
Query: 241 tgaagagagggtgtgggaggggcagccacgggactctgggatgttttctgcctccctttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tgaagagagggtgtgggaggggcagccacgggactctgggatgttttctgcctccctttt 318
Query: 301 caatgcaaagga-ggacgacattcccctggtacagct--gagtgcaggatgaattgagag 357
||||||| | || |||| |||||||||||| |||||| |||||||||||||||||||||
Sbjct: 317 caatgcaga-gagggaccacattcccctggcacagctgagagtgcaggatgaattgagag 259
Query: 358 gcttactctggagtagctggtacagtcatacatcacttaatgtagggacacattccaa 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gcttactctggagtagctggtacagtcatacatcacttaatgtagggacacattccaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 817
Length adjustment: 9
Effective length of query: 406
Effective length of database: 808
Effective search space: 328048
Effective search space used: 328048
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
