Query= MSMg01no349_p24.b1 MSMg01no349_p24.b1 CHROMAT_FILE:
MSMg01no349_p24.b1 PHD_FILE: MSMg01no349_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:47 2005
(541 letters)
>mm_chr9_55881244_55882184
Length = 941
Score = 1011 bits (523), Expect = 0.0
Identities = 532/535 (99%)
Strand = Plus / Plus
Query: 7 gaattcttggagtctccttgcttcttggaaggtagggtacgatttggaggagatggttac 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcttggagtctccttgcttcttggaaggtagggtacgatttggaggagatggttac 266
Query: 67 tgaatggttttgaggatagaagaacagtatctggacaagattaattgacagtgtgtgagc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tgaatggttttgaggatagaagaacagtatctggacaagattaattgacagtgtgtgagc 326
Query: 127 acaatacactgtcataatagtctcattgatttgtgcaatgagaaataaaagaaggcgtga 186
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 327 acaatacactgtcataatagtctcattgatttttgcaatgagaaataaaagaaggcgtga 386
Query: 187 ataacaagatcctgaggtccagccccctggtataattgactttcaggatttccacttcca 246
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 acaacaagatcctgaggtccagccccctggtataattgactttcaggatttccacttcca 446
Query: 247 ggtctgatgctcttctcctattaagtggagagcaggtgagcgtgtgttcagtcaggacag 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ggtctgatgctcttctcctattaagtggagagcaggtgagcgtgtgttcagtcaggacag 506
Query: 307 gtgagatagctctcacttgataaggaaactctgagtaaagacgggaagtcatatttttgg 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gtgagatagctctcacttgataaggaaactctgagtaaagacgggaagtcatatttttgg 566
Query: 367 agcaatctaacacgttctgtgcaattctaaaatagatgacagggctggtgagatggctca 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 agcaatctaacacgttctgtgcaattctaaaatagatgacagggctggtgagatggctca 626
Query: 427 gtgggtaagagcacccgactgctcttccgaaggtccagagttcatatcccagcaaccaca 486
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 627 gtgggtaagagcacccgactgctcttccgaaggtccagagttcaaatcccagcaaccaca 686
Query: 487 tggtggctcacagccatccgtaacgagatctgactccctcttctggagtgtctga 541
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tggtggctcacagccatccgtaacgagatctgactccctcttctggagtgtctga 741
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space: 494361
Effective search space used: 494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no349_p24.g1 MSMg01no349_p24.g1 CHROMAT_FILE:
MSMg01no349_p24.g1 PHD_FILE: MSMg01no349_p24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:47 2005
(568 letters)
>mm_chr9_56060311_56061283
Length = 973
Score = 1046 bits (541), Expect = 0.0
Identities = 563/573 (98%), Gaps = 5/573 (0%)
Strand = Plus / Minus
Query: 1 tgttcaaaagagattgatgaaaacatgaagctgaaaagtttatgttgatcccaagtagag 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 773 tgttcaaaagagattgatgaaaacgtgaagctgaaaagtttatgttgatcccaagtagag 714
Query: 61 aaaatattaggtaaaggaatt-----aaaaaaaaactggcagtaagaactttgtccattt 115
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 713 aaaatattaggtaaaggaatttaaaaaaaaaaaaactggcagtaaaaactttgtccattt 654
Query: 116 attctggaaagagtggtttgttctccagaataacttttgggctagaaatttatcatctga 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 attctggaaagagtggtttgttctccagaataacttttgggctagaaatttatcatctga 594
Query: 176 agccagatcattttgaggtatttttctaatctaaaggagtcaagttattaatatttgaaa 235
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 agtcagatcattttgaggtatttttctaatctaaaggagtcaagttattaatatttgaaa 534
Query: 236 aatggctactatgtagtacatataataatataatattcctgcctaaattaacatcattgc 295
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 533 aatggctactatgtagtacatagaataatataatattcctgcctaaattaacatcattgc 474
Query: 296 agcctctataataaaaatttatgagctacctatcatgtgaaatcctattatggaaatctc 355
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 agcctctataataaagatttatgagctacctatcatgtgaaatcctattatggaaatctc 414
Query: 356 cacaagtccatgtttgggttgtaaccggcttcacggttataaaccaattaaaagcacagt 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 cacaagtccatgtttgggttgtaaccggcttcacggttataaaccaattaaaagcacagt 354
Query: 416 gcctctcctctctcttctgctctttcttctctcgttttcatttgcccttaaaccagattg 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gcctctcctctctcttctgctctttcttctctcgttttcatttgcccttaaaccagattg 294
Query: 476 acccattattcttcagcctgtctgtgtaaatacagagataaggaagtgctacctactcag 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 acccattattcttcagcctgtctgtgtaaatacagagataaggaagtgctacctactcag 234
Query: 536 cttgctctctgggcaggccattttcctcccaag 568
|||||||||||||||||||||||||||||||||
Sbjct: 233 cttgctctctgggcaggccattttcctcccaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 973
Length adjustment: 10
Effective length of query: 558
Effective length of database: 963
Effective search space: 537354
Effective search space used: 537354
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
