BAC Information

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BAC

Clone NameMSMg01-350A09
Chromosome9 (Build37)
Map Location 90,131,862 - 90,132,186
singlet/doubletsinglet
Overlap geneTbc1d2b
Upstream geneMthfs, AF529169, Tmed3, B230218L05Rik, Rasgrf1, Ctsh, Morf4l1, LOC621414, Adamts7
Downstream geneLOC100039777, LOC100039925, EG434428, LOC621576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350A09.T7 (MSMg01no350_a09.b1)MSMg01-350A09.TJ (MSMg01no350_a09.g1)
ACCAG461738AG461739
length724751
length of high quality
(start - end)		326 (334 - 659)505 (86 - 590)
definitionCHROMAT_FILE: MSMg01no350_a09.b1 PHD_FILE: MSMg01no350_a09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:49 2005CHROMAT_FILE: MSMg01no350_a09.g1 PHD_FILE: MSMg01no350_a09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNAAAATTTATXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAGAGAG
CCGCGGAATTCAATAAATTCCACACAAACACAGGGTTATCTCCACAATCA
ATTTAGTACTCGTTTGAATCCAAAACAAAAACATTTGAGCCGTTCCTTTT
AGGGAAAAATGGCTTTACTATTTCTACAGTTATTAAGTTCTCTCTCTGTT
AGGGTTGTAGCTCAGAAGGCACAAGCTTGCTTAGCGTGTTGCAATCGCTG
GAAACATTATAAAAAGGTTCTCTATCCACTCAGATCATTTTGTTGTCACC
TTCCTAAAATGTGCCCACAAGTAAAATTTTTTACGCCCTCTTCCCCTGGG
CGTATTAACTTTTCCTTATCTAGTCCATCTCATGAGGTATGCAAGGTTGC
TTACAAATGAGATCTGGAAGCAGAGAATGGTGTGTGACTTGCTTGAGGCA
GCTGCCTATGAAATGGCACAGCTGAGAATCCTCCCTGGGAGTCTGCCTCT
AACACCATGCAGCGCCATGACAGAGGAGCCGACGTTGCTCCTGCTGACAG
TACCTCCGAATTTACTCGGAAAGTTGTCCTGAACAAAGGTGACATGTGTT
CTCTTTTCCAGGTGGAGACACTCTGAGCTCTGGGAAATGGGAAGTACCTA
ACTGTAGGTCTGATTCTACCTCAGTCCACTGTCTCCTCTGAGGGCAGATG
GNGTTGTACAAGACCAATCCCCTG

NNTTTTTTTCCCATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACTCAATATTTCAA
GAGGAGACTAAAACAATGTTTTTGGAACTATTCTACAAAATAAAAATAGA
AGGAACAGTTACAAACTTTTTCTACGAGGCCACTATCACTGTAACACCAA
AACCAGATAACACAACAAATAAGATATCTACAGACCTACGTTCCTGGTGA
AGATAGATGCAAAATCTCTCAACAAAATATTTGGAAATTAAATATAGGCA
TGCATCAAAAGATAATTTGATAGGACAAAATGTGCTTATCCTAGAGATAT
AAGGATGGCTTCAGAAATGCAAATATATACAAGTAGCAAGTTATATAAAC
ATAATTAAACACATACATACACACACACTCACAAACTGACCATCTCAATA
AATGCAGAAGGGGCCTTTGATAAAATCCCACATTCTTTCATGATAAAATC
CATGTGGGAAATACACCTCATAATAAAGATTACATATGGCAAACTCATAG
TATATATCACCCTAAATGGAAAAAAAATTGAAGCTATCCCATCACAATCA
GGAACAAGATGGGATTATCCAATAACTCTACTTCTATTCAGAGCAGTGCT
CANAGTGCTAGCCGAAATAACAAGACCAGAAAAGGGAATAAAAGTCCCCC
CATAAGAAAAGAAAGCAAAGAATTCCTGGTGGGAAAATGAGGCTTCTCAA
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_a09.b1 MSMg01no350_a09.b1 CHROMAT_FILE:
MSMg01no350_a09.b1 PHD_FILE: MSMg01no350_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:49 2005
         (326 letters)



>mm_chr9_90131662_90132387
          Length = 726

 Score =  621 bits (321), Expect = 0.0
 Identities = 324/325 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgccctcttcccctgggcgtattaacttttccttatctagtccatctcatgaggtatgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgccctcttcccctgggcgtattaacttttccttatctagtccatctcatgaggtatgca 260

                                                                       
Query: 61  aggttgcttacaaatgagatctggaagcagagaatggtgtgtgacttgcttgaggcagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggttgcttacaaatgagatctggaagcagagaatggtgtgtgacttgcttgaggcagct 320

                                                                       
Query: 121 gcctatgaaatggcacagctgagaatcctccctgggagtctgcctctaacaccatgcagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcctatgaaatggcacagctgagaatcctccctgggagtctgcctctaacaccatgcagc 380

                                                                       
Query: 181 gccatgacagaggagccgacgttgctcctgctgacagtacctccgaatttactcggaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 gccatgacagaggagccgacgttgctcctgctgacagtacctccgaacttactcggaaag 440

                                                                       
Query: 241 ttgtcctgaacaaaggtgacatgtgttctcttttccaggtggagacactctgagctctgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgtcctgaacaaaggtgacatgtgttctcttttccaggtggagacactctgagctctgg 500

                                    
Query: 301 gaaatgggaagtacctaactgtagg 325
           |||||||||||||||||||||||||
Sbjct: 501 gaaatgggaagtacctaactgtagg 525


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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