BAC Information

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BAC

Clone NameMSMg01-350F02
Chromosome9 (Build37)
Map Location 72,823,654 - 72,823,927
singlet/doubletsinglet
Overlap genenone
Upstream geneTcf12, EG666001, LOC665959, EG665964, LOC665970, Suhw4, LOC100041760, Mns1, LOC666007, Tex9, 4930509E16Rik, Rfxdc2, Nedd4, EG639396, Prtg, LOC100040694, Pygo1, Dyx1c1
Downstream geneEG546143, Ccpg1, LOC100041896, Pigb, Rab27a, 2410004A20Rik, BC003885, EG436081, Unc13c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350F02.T7 (MSMg01no350_f02.b1)MSMg01-350F02.TJ (MSMg01no350_f02.g1)
ACCAG461959AG461960
length775767
length of high quality
(start - end)
165 (57 - 221)267 (88 - 354)
definitionCHROMAT_FILE: MSMg01no350_f02.b1 PHD_FILE: MSMg01no350_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:12 2005CHROMAT_FILE: MSMg01no350_f02.g1 PHD_FILE: MSMg01no350_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTCCCATGGGTTNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCACAGCCTTGTGGATGTCAGCATGCAGCTGAAAGA
CCAGGAAAAATTCAGACCCCCTAGCACCAAGAATGTAGGTTAGCTGGTTC
AGTGACCCTGTTCCAGGAACTGGTTAACTACAAGAATTAGATTAAGATCT
TGAGAACAATCTTGAGAAGCAGGGAGGTTCCACTTGTGATTTTTAGTACC
CCCTTGTGATTTTTCACTGGTATTCTCTGTATTTTCCAATAACGCCCTCC
CTACTCCCTTAGGTTGTGGGTTTTTTTGTTCCTGTAAAGACCCGCTGGTC
CCAGCGACTGTCGGCCCCAGAGCACACCTGGAATAAAAAGTCCTCTTGCG
GTTTGCATCAAGGCTGTTTCTTGTGAGTCACTTAAGTAATACCTCTCCTG
ACTCCCAACGTGGACCAGTCCTTCTCCTTACGGTTCTTTCACGGCCATAT
GCTTCTCTTCAAGTGTCTTCTGACCCCCGCTACTTCCTTTCAAGTTTGTC
CTTCCTCTTTGCTACATTTTCTTTTTCTTCATACTCCCTTCTCACTCCTC
CCTCCTCACCCCATCTTGATTTCTTTCTTTCTTATCTTTCTTTCTTTCTT
TTTTATTTTTTTTCTTCCATTTCTCAGACCCCTTCCTTTCCTGGGCCCCC
TTTGACTTGCCCTTCTCCCTCACATCCTCCGCTTTCTTTTCCTATTTCTC
TACATATTTCACCCCTTTCCTCCCG
NCTATTTTCTTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACTGTGTTATCC
CAGGTTGACCATGAAATTCTGGTCCTTGTGCCTAAGTCTGCAGAGTACTC
AGGGTACAAGTGAACTCCAGCATGCCTAGCTTTGAACACTTTTTAAGATT
TATTTTTAAATTTTTAATTGTGTGTCTGTGTGTGTATCTGTGGGTACATA
CTGGTGAGTAGAGATGCCTCAGAGGCATATGATCCCTGGAAAGCTGGAAT
TATAGGGGCTGTGAGTCCCTTCCCCTTTTCCCATGGTGCTCAGGACAAAA
CAAGATTAGTCTGTGCTCTTAACTGCTAAGCCACCTTTTCTGCCCCTGAA
CATGTGTTTATATGGTACGGCCCAGTGGCTTACATCTGGAGCTTAATGTG
TCTTTATACTTTATTGATATTTCTATCCTATCTGCCTTACCTTCACAGAC
CTCTTTTCTCCTAACCAAATGCTCTCCCGTTATTGTCCTTGTAGTTTCCA
CCTTTTCCTTATTCTCACGATTTTAACTGGTTTTATATTATCATTTCTTA
CTTTTTTACCTTCTCTCCTTTTTCTCTATCTTCTTATACTTTATCTTCTA
CTATTCACTCATTACCTCTCTCCCTCGATTTACCTCTTATCTTCTCTCAT
ATGTATTTCTCTGTCTTTTTTTTTTTCTTCCTTTTTTTTTTTTTTTTTAT
TTCCCTCTCTCCCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_f02.g1 MSMg01no350_f02.g1 CHROMAT_FILE:
MSMg01no350_f02.g1 PHD_FILE: MSMg01no350_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:12 2005
         (267 letters)



>mm_chr9_72823454_72824120
          Length = 667

 Score =  468 bits (242), Expect = e-136
 Identities = 263/274 (95%), Gaps = 7/274 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tactgtgttatcccaggttgaccatgaaattctggtccttgtgcctaagtctgcagagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 tactgtgttatcccaggttgaccatgaaattctggtccttgtgcctaagtctgcagagtc 260

                                                                       
Query: 61  ctcagggtacaagtgaactccagcatgcctagctttgaacactttttaagatttattttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcagggtacaagtgaactccagcatgcctagctttgaacactttttaagatttattttt 320

                                                                       
Query: 121 aaatttttaattgtgtgtctgtgtgtgtatctgtgggtacatactggtgagtagagatgc 180
           |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 321 aaatttttaattgtgtgtctgtgtgtgtatctgtgggtacttactggtgagtggagatgc 380

                                                                       
Query: 181 ctcagaggc-------atatgatccctggaaagctggaattataggggctgtgagtccct 233
           |||||||||       ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 ctcagaggccagaggcatatgatccctgggaagctggaattataggggctgtgagtccct 440

                                             
Query: 234 tccccttttcccatggtgctcaggacaaaacaag 267
           ||||||||||||||||||||||||||||||||||
Sbjct: 441 tccccttttcccatggtgctcaggacaaaacaag 474


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 667
Length adjustment: 9
Effective length of query: 258
Effective length of database: 658
Effective search space:   169764
Effective search space used:   169764
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)