BAC Information

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BAC

Clone NameMSMg01-350F19
Chromosome9 (Build37)
Map Location 94,703,904 - 94,878,659
singlet/doubletdoublet
Overlap geneSlc9a9
Upstream geneLOC674371, LOC384967, EG384968, 1190002N15Rik, EG667601
Downstream geneChst2, LOC667088, 2610101N10Rik, LOC100040097, Paqr9, Pcolce2, Trpc1, AI427122, 1700065D16Rik, Xrn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350F19.T7 (MSMg01no350_f19.b1)MSMg01-350F19.TJ (MSMg01no350_f19.g1)
ACCAG461993AG461994
length788788
length of high quality
(start - end)
465 (47 - 511)425 (79 - 503)
definitionCHROMAT_FILE: MSMg01no350_f19.b1 PHD_FILE: MSMg01no350_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:16 2005CHROMAT_FILE: MSMg01no350_f19.g1 PHD_FILE: MSMg01no350_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,878,198 - 94,878,659)(94,703,904 - 94,704,329)
sequence
NCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGCTGCCTTCTATAAATCAGACATTTGTAGATTTGCAAAAATTT
AAACAGGAAGTGTTGCCTATGTTAACATGTAATATTTTCATTATTATCAT
TTTGAAATAAATTAGCTAAAAATTTTAAATCCTCATTTAAACTTTCTAAT
ATGGGAAGATTGATCACTGTAATTATTCCTATTCTGGTAAATGTTTAACA
GTTGGCCCTTTGGGAGGAGTGGGAGAGAGCTGATGGTGGTGTCAGCTGAT
TGCACAGTGTGAATTCACCCATGATGTCTTCAGGTTGTTGCTAAACCTGA
GGTGGGAGTTAATTTCAGCTAGCTCCCCTGAACATGGTTCACAAAATCAA
AGTTCTTTGGTAAAACCTCAATAATTTCTAAGTCTGTAAAGAAGCCTTGT
TCATAAAAGATTATGAACTGCCTATGGTACTGACAGATCCCCTTTAATCT
CAGCCCTCAGGAGTGGGGACAGCAGCAGGAAGATCTCTTGTAGTTCTAGA
CCAACCTAGTCCACATCATGAGATCTTGGCTCAAAACAACNAACCTAATT
ACCAACCTTACAATCCAACCTTATCCCCCGGAAGGAAACTTGGAAAATCA
ACTTATAGTGGAACATACTCCCTACAACAAACTATTCCCCAATCCCCTGC
TGGGCTAAATTTATTTTTATTTGCCGGAAAAAATTTTTGTTTGAAACCCC
CCTTGGGCAAAAAAAGTGTTTTTTTATCTAATTCCCTG
NNCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCACATAGTTCCCTACTTCTTGT
GCTCAGGTAACCATGTGATCTTTAGGGGATTAATGCAAATAATCCACACT
TCCCTTCCTTAGCCATTACAAATTCAATGCAAAAATCTGCCTTTCTTTGT
GTTATAGACACAGCTTGGTGATGGTTATTTTCTAATAAAACGCAAAAGAG
AGAATTTTTTTTAAGATACCAAGATGAAAAGGACGTGTTTTGAAATTATC
CAAGCAACTGAATGTTCTGGAACTTTTTGTTTTGAAACCTTCTCTCAGCA
TGCCTTTAGGTATACAAGTTAGAGACTATGAGACAAGCTGAAGAAATTTC
AAATCAGTAAATGCTTCATGAACACCCAGGAAAGTGAGAACATTGAGCAT
TTCCCCAAATTCTCTTGCCCAGTGCCCTTCACTCAAGTGAATGACATACT
GCCTTTTGTTTCTCTACTGAGTGTCATAGATTTCCAGCCACTATCCAAAG
GATAGCACTTAAATGGCATCACACCTCCTGTGGGAACTAAAGGTTGAAAT
CCGGGTTATCCATACCCCCGTGGTCTGAAGGGGAAATTCCTGCTATTTTT
CACAATTTCCCTTAGGGGGCCCTAATTTTTCATAATCCCCTGGGCTCTTT
CGCTTTTAGTTGGCCTTTTTTGAAAATTCTGCAAACTTCTTTGTATTAAT
TATCCCTACTTCTTTGCTAATATTCCTTATCCTCTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_f19.b1 MSMg01no350_f19.b1 CHROMAT_FILE:
MSMg01no350_f19.b1 PHD_FILE: MSMg01no350_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:16 2005
         (465 letters)



>mm_chr9_94877898_94878763
          Length = 866

 Score =  839 bits (434), Expect = 0.0
 Identities = 455/462 (98%), Gaps = 1/462 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagctgccttctataaatcagacatttgtagatttgcaaaaatttaaacaggaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 gaattcagctgccttctataaatcagacatttgtagatttgcaaaaatttaaacaggaag 703

                                                                       
Query: 65  tgttgcctatgttaacatgtaatattttcattattatcattttgaaataaattagctaaa 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 702 tgttgcctatgttaacatgtaatattttcattattatcattttgaaataaattacctaaa 643

                                                                       
Query: 125 aattttaaatcctcatttaaactttctaatatgggaagattgatcactgtaattattcct 184
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 atttttaaatcctcatttaaactttctaatatgggaagattgatcactgtaattattcct 583

                                                                       
Query: 185 attctggtaaatgtttaacagttggccctttgggaggagtgggagagagctgatg-gtgg 243
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 582 attatggtaaatgtttaacagttggccctttgggaggagtgggagagagctgatgtgtgg 523

                                                                       
Query: 244 tgtcagctgattgcacagtgtgaattcacccatgatgtcttcaggttgttgctaaacctg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgtcagctgattgcacagtgtgaattcacccatgatgtcttcaggttgttgctaaacctg 463

                                                                       
Query: 304 aggtgggagttaatttcagctagctcccctgaacatggttcacaaaatcaaagttctttg 363
           || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 agttgggagttaattccagctagctcccctgaacatggttcacaaaatcaaagttctttg 403

                                                                       
Query: 364 gtaaaacctcaataatttctaagtctgtaaagaagccttgttcataaaagattatgaact 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gtaaaacctcaataatttctaagtctgtaaagaagccttgttcataaaagattatgaact 343

                                                     
Query: 424 gcctatggtactgacagatcccctttaatctcagccctcagg 465
           ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 342 gcctatggtactggcagatcccctttaatctcagccctcagg 301


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 866
Length adjustment: 10
Effective length of query: 455
Effective length of database: 856
Effective search space:   389480
Effective search space used:   389480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no350_f19.g1 MSMg01no350_f19.g1 CHROMAT_FILE:
MSMg01no350_f19.g1 PHD_FILE: MSMg01no350_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:16 2005
         (425 letters)



>mm_chr9_94703704_94704529
          Length = 826

 Score =  808 bits (418), Expect = 0.0
 Identities = 424/426 (99%), Gaps = 1/426 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacatagttccctacttcttgtgctcaggtaaccatgtgatctttaggggattaatgcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacatagttccctacttcttgtgctcaggtaaccatgtgatctttaggggattaatgcaa 260

                                                                       
Query: 61  ataatccacacttcccttccttagccattacaaattcaatgcaaaaatctgcctttcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataatccacacttcccttccttagccattacaaattcaatgcaaaaatctgcctttcttt 320

                                                                       
Query: 121 gtgttatagacacagcttggtgatggttattttctaataaaacgcaaaagagagaatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgttatagacacagcttggtgatggttattttctaataaaacgcaaaagagagaatttt 380

                                                                       
Query: 181 tttt-aagataccaagatgaaaaggacgtgttttgaaattatccaagcaactgaatgttc 239
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttttaagataccaagatgaaaaggacgtgttttgaaattatccaagcaactgaatgttc 440

                                                                       
Query: 240 tggaactttttgttttgaaaccttctctcagcatgcctttaggtatacaagttagagact 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggaactttttgttttgaaaccttctctcagcatgcctttaggtatacaagttagagact 500

                                                                       
Query: 300 atgagacaagctgaagaaatttcaaatcagtaaatgcttcatgaacacccaggaaagtga 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgagacaagctgaagaaatttcaaatcagtaaatgcttcatgaacacccaggaaagtga 560

                                                                       
Query: 360 gaacattgagcatttccccaaattctcttgcccagtgcccttcactcaagtgaatgacat 419
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaacattgagcaattccccaaattctcttgcccagtgcccttcactcaagtgaatgacat 620

                 
Query: 420 actgcc 425
           ||||||
Sbjct: 621 actgcc 626


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 826
Length adjustment: 9
Effective length of query: 416
Effective length of database: 817
Effective search space:   339872
Effective search space used:   339872
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)