Query= MSMg01no350_f23.b1 MSMg01no350_f23.b1 CHROMAT_FILE:
MSMg01no350_f23.b1 PHD_FILE: MSMg01no350_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:16 2005
(430 letters)
>mm_chr9_53304604_53305433
Length = 830
Score = 588 bits (304), Expect = e-172
Identities = 319/324 (98%)
Strand = Plus / Minus
Query: 1 gacaaacccaaaacacaccaaaaaatgttgtgtgtgtggtgatgtgtgtctctggccttg 60
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 324 gacaaacccaaaacacaacaaaaaatgttgtgtgtgtggtgatgtatgtctctggccttg 265
Query: 61 ctattcaaagactaagctaaatttggactgtagaatgattacaactagttaaaaaataca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 264 ctattcaaagactaagctaaatttggactgtagaatgattacaactagttaaaaaatgca 205
Query: 121 gataggggctggagaaatggctcttagttaagagcactgactgttctcccagaggaccag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gataggggctggagaaatggctcttagttaagagcactgactgttctcccagaggaccag 145
Query: 181 agtttgattcccagcacctacatggcagcttacaactgcctgtaactccagttcctgggg 240
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 144 agtttgattcccagcacccacatggcagcttacaactacctgtaactccagttcctgggg 85
Query: 241 gtcttgtggctttttctgatctctgcaggcactatacatagacttacatgcatgcaaatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 gtcttgtggctttttctgatctctgcaggcactatacatagacttacatgcatgcaaatc 25
Query: 301 gcccacacacataaaaataaattt 324
||||||||||||||||||||||||
Sbjct: 24 gcccacacacataaaaataaattt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space: 345641
Effective search space used: 345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no350_f23.g1 MSMg01no350_f23.g1 CHROMAT_FILE:
MSMg01no350_f23.g1 PHD_FILE: MSMg01no350_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:16 2005
(404 letters)
>mm_chr9_53153418_53154221
Length = 804
Score = 752 bits (389), Expect = 0.0
Identities = 401/406 (98%), Gaps = 2/406 (0%)
Strand = Plus / Plus
Query: 1 agagtta--gagatctctccttcttaggctgtgatggtaggtgtggtgcagacagatgag 58
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 agagttaaagagatctctccttcttaggctgtgatggtaggtgtggtgcagacagatgag 258
Query: 59 cagctggaagaagcaagatgtggggagagtctgagtttcatcctgggtagccagtggctt 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cagctggaagaagcaagatgtggggagagtctgagtttcatcctgggtagccagtggctt 318
Query: 119 ccttgatctgattatctttacgaagtttgagccccgtgaacagttttacatgaagagatg 178
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ccttgatctgattatctttatgaagtttgagccccgtgaacagttttacatgaagagatg 378
Query: 179 gtcagatcctggctttggaatataattgaggcagcacacggctgggaaagaggaaacttt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 379 gtcagatcctggctttggaatataattgaggcagcacacggctgggaaagaggaaccttt 438
Query: 239 ctttttatttctccaggataattgggaagccctgcagcttcttcagacaaagctaatggc 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ctttttatttctccaggataattgggaagccctgcagcttcttcagacaaagctaatggc 498
Query: 299 tgtaacaattcccgacatgggtgataacagccaaggcaataaatagctttacttttgtgt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tgtaacaattcccgacatgggtgataacagccaaggcaataaatagctttacttttgtgt 558
Query: 359 tctgtcaagcttgtatcanagtcccacccaaggatcagacagagca 404
|||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 559 tctgtcaagcttgtatcaaagtcccacccaaggatcagacagagca 604
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space: 314025
Effective search space used: 314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
