BAC Information

Click to search

BAC

Clone NameMSMg01-350N10
Chromosome9 (Build37)
Map Location 117,227,388 - 117,385,775
singlet/doubletdoublet
Overlap genenone
Upstream geneD730003K21Rik, Rbms3
Downstream geneLOC665840, LOC100039650, LOC100039681, Azi2, 2010110K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350N10.T7 (MSMg01no350_n10.b1)MSMg01-350N10.TJ (MSMg01no350_n10.g1)
ACCAG462355AG462356
length733760
length of high quality
(start - end)		343 (82 - 424)312 (92 - 403)
definitionCHROMAT_FILE: MSMg01no350_n10.b1 PHD_FILE: MSMg01no350_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:54 2005CHROMAT_FILE: MSMg01no350_n10.g1 PHD_FILE: MSMg01no350_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,227,388 - 117,227,730)(117,385,464 - 117,385,775)
sequence
NGGGGGGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTC
AAAGAGGATCCGCGGAATTCCATGTCCCGCACAGTGACACACAGTGATGT
GTGGATTCACCTAGAGGTTCACACATGTGTCACAGGAGTCTTTACAAGCA
AGAAGGTTGGAGGCAGGAAAGGAAATTTCCAGCCAGCGAGTTATTTAGCA
GACCACATTGAACTTCCTTTTGCCCATGATCTTGCCCTGCCAACTCCAAA
CACAACCACTGCGAACCATTAATTAAATCATCACCATGTGTGTTAGACAC
AAATCCCCATGCTTACTTTCATTTTGAAATATTATCATTTTCCATTTGGC
GCTTTTGATCTTAAAATCGGGTGGAGTTTAACTGCGGTCCAGTAATAAAA
GAAAGTCTCAACAGAACCAGGGAACCCCCCCGCATGTAACTTATAGCAGA
GAATGAAAGCCCTAGCGGAATGTGGGCCAGCTTAACCTCTCTTGTTTTCC
GCCGCCGGTCTTATTTTCCCTTCATATCTCCAACCTTATCCATGCCCCCG
CTTCTTCGCCTCCCTTCTCCTACATCTCCTCTCTCACACATTCTTATCCC
CCTCTCTCTTCTTTTTTCTCATACTTTTCTATTTTCTCTATCCTCTTCTT
TTTTTTTCCCCTCTTTTCTCTTCTCTTATCCCCTCATCTCCTATTTCTTC
CCTACACCATTCGTTTTTCTTCTCTTCACTTTT

NCCCCTCATTTNNNCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGCAGGG
GAATTAGAAGGTGGAGGTGCCAGAGGGTCAGAATTATAAACAATGGAGGA
ACTCTTCATGCATGTATACACTCGTGTAATGACTTCTAAAGTCCCATTGT
ATGCTGGGTTTTGTGATAGGTGTTGCAAAGGGATCACACAGTGTAACGTA
AGCTGAGCTTTGTTCTTTGGGCAGAGGCTTTTTAGTCAGAATTTCACTGC
TTCTAAGTGAATGTGGTAGATAAGAAGAGGCTATTTGTAAATGTTCAACT
TCTTACTATCAACTGCCAAGGTGGTAGGCAGGTGAGACGGGTGGGTGAGG
CTGATAACTTGAACTTGGTCTTCATTGAAGGACACAAACTAATCCTGGTT
ATTGACCTCTGACCTCCAAAGTTAAGTTGTCTTACACTTACAGATTATCA
ATCCTGTCTTTTTAGTCCATTCTCTGATTTCATATATTTCTTGTCTCTTA
TTTACCTTTTCTCATCCTTTACATCTATTACCTTCTTTCTCTTTTTATTT
TCTTTGATATATTTTTTCTTCTTTGAATTTTATATTTTCATTTACTTTAA
TTTTTATTTTATTATTTCCTAAATTTATCATTTTTAATTAATTTTCTTTC
TTTTCGTTTTTTTACTACCGTTATTTTTTTATTTTTTATAACTCCCTTCC
TATCTCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_n10.b1 MSMg01no350_n10.b1 CHROMAT_FILE:
MSMg01no350_n10.b1 PHD_FILE: MSMg01no350_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:54 2005
         (343 letters)



>mm_chr9_117227188_117227930
          Length = 743

 Score =  625 bits (323), Expect = 0.0
 Identities = 338/343 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtgacacacagtgatgtgtggattcacctagaggttcacacatgtgtcacaggagtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtgacacacagtgatgtgtggattcacctagaggttcacacatgtgtcacaggagtct 260

                                                                       
Query: 61  ttacaagcaagaaggttggaggcaggaaaggaaatttccagccagcgagttatttagcag 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 ttacaagcaagaaggttggaggcaggaaaggaaatttccagccagtgagttatttagcag 320

                                                                       
Query: 121 accacattgaacttccttttgcccatgatcttgccctgccaactccaaacacaaccactg 180
           || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaacattgaacttccttttgcacatgatcttgccctgccaactccaaacacaaccactg 380

                                                                       
Query: 181 cgaaccattaattaaatcatcaccatgtgtgttagacacaaatccccatgcttactttca 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaaccattaattaaatcatcaccatgtgtgttagacacaaatccccatgcttactttca 440

                                                                       
Query: 241 ttttgaaatattatcattttccatttggcgcttttgatcttaaaatcgggtggagtttaa 300
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 ttttgaaatattatcattttccatttggggcttttgatcttaaaatcgggtggagtttaa 500

                                                      
Query: 301 ctgcggtccagtaataaaagaaagtctcaacagaaccagggaa 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgcggtccagtaataaaagaaagtctcaacagaaccagggaa 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no350_n10.g1 MSMg01no350_n10.g1 CHROMAT_FILE:
MSMg01no350_n10.g1 PHD_FILE: MSMg01no350_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:54 2005
         (312 letters)



>mm_chr9_117385264_117385975
          Length = 712

 Score =  596 bits (308), Expect = e-175
 Identities = 311/312 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgcaggggaattagaaggtggaggtgccagagggtcagaattataaacaatggaggaa 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 attgcaggggaattaggaggtggaggtgccagagggtcagaattataaacaatggaggaa 453

                                                                       
Query: 61  ctcttcatgcatgtatacactcgtgtaatgacttctaaagtcccattgtatgctgggttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ctcttcatgcatgtatacactcgtgtaatgacttctaaagtcccattgtatgctgggttt 393

                                                                       
Query: 121 tgtgataggtgttgcaaagggatcacacagtgtaacgtaagctgagctttgttctttggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tgtgataggtgttgcaaagggatcacacagtgtaacgtaagctgagctttgttctttggg 333

                                                                       
Query: 181 cagaggctttttagtcagaatttcactgcttctaagtgaatgtggtagataagaagaggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 cagaggctttttagtcagaatttcactgcttctaagtgaatgtggtagataagaagaggc 273

                                                                       
Query: 241 tatttgtaaatgttcaacttcttactatcaactgccaaggtggtaggcaggtgagacggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tatttgtaaatgttcaacttcttactatcaactgccaaggtggtaggcaggtgagacggg 213

                       
Query: 301 tgggtgaggctg 312
           ||||||||||||
Sbjct: 212 tgggtgaggctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |