Query= MSMg01no350_n16.b1 MSMg01no350_n16.b1 CHROMAT_FILE:
MSMg01no350_n16.b1 PHD_FILE: MSMg01no350_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:56 2005
(273 letters)
>mm_chr9_119067340_119068012
Length = 673
Score = 505 bits (261), Expect = e-147
Identities = 267/269 (99%)
Strand = Plus / Minus
Query: 5 gaattcaacattttgccattacaacaggcacactcagcatccgtgtaagcaacttacaaa 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 gaattcaacattttgacattacaacaggcacactcagcatccgtgtaagcaacttacaaa 414
Query: 65 caaacaaacaaaaataaaacacaaaatctcatttctcttcgggccttagataagctatgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 caaacaaacaaaaataaaacacaaaatctcatttctcttcgggccttagataagctatgt 354
Query: 125 ttttgtcttgggtggctgtccttggcctagccccatgcagacagtgggctgtgggttcta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ttttgtcttgggtggctgtccttggcctagccccatgcagacagtgggctgtgggttcta 294
Query: 185 catgcatcctaggaactgatggcatcacaggcttccccccgggcttctaagaggtccaca 244
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 catgcgtcctaggaactgatggcatcacaggcttccccccgggcttctaagaggtccaca 234
Query: 245 aaggcgagcactggaagacagtggggagg 273
|||||||||||||||||||||||||||||
Sbjct: 233 aaggcgagcactggaagacagtggggagg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space: 175296
Effective search space used: 175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no350_n16.g1 MSMg01no350_n16.g1 CHROMAT_FILE:
MSMg01no350_n16.g1 PHD_FILE: MSMg01no350_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:56 2005
(343 letters)
>mm_chr9_118899504_118900247
Length = 744
Score = 629 bits (325), Expect = 0.0
Identities = 339/344 (98%), Gaps = 1/344 (0%)
Strand = Plus / Plus
Query: 1 ttcccaccacgtagaaacaagtgctttgctctctgggaaaacagcattggaattttgcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcccaccacgtagaaacaagtgctttgctctctgggaaaacagcattggaattttgcct 260
Query: 61 tgagttgatagcacatgacaggacagagtctctgaatacattctcacctccatctttatt 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagttgatagcacatgacaggatagagtctctgaatacattctcacctccatctttatt 320
Query: 121 ttaaaagtgacgtgtgaagtggaaactagactaggaaatcagtgtggcaagtgccgggtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaaaagtgacgtgtgaagtggaaactagactaggaaatcagtgtggcaagtgccgggtg 380
Query: 181 ccacttccaggagggattatttaaggacagtgtgtgttctctgatccagacccaggctct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccacttccaggagggattatttaaggacagtgtgtgttctctgatccagacccaggctct 440
Query: 241 gaagaagcagagggtctgggaggctgttgttgagagagctgaagagtaggtcatggcggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaagaagcagagggtctgggaggctgttgttgagagagctgaagagtaggtcatggcggg 500
Query: 301 ctgtggggggtgggggg-acctgcngctgaggaagacttggcag 343
|| ||||||||||||| |||||| |||||||||||||||||||
Sbjct: 501 gtgcggggggtgggggggacctgcagctgaggaagacttggcag 544
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 744
Length adjustment: 9
Effective length of query: 334
Effective length of database: 735
Effective search space: 245490
Effective search space used: 245490
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
