Query= MSMg01no351_b01.b1 MSMg01no351_b01.b1 CHROMAT_FILE:
MSMg01no351_b01.b1 PHD_FILE: MSMg01no351_b01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:13 2005
(514 letters)
>mm_chr9_30109063_30109983
Length = 921
Score = 926 bits (479), Expect = 0.0
Identities = 507/525 (96%), Gaps = 15/525 (2%)
Strand = Plus / Minus
Query: 5 gaattcagctggaatgtacgactgctgcacggcatattgggaggccattcgaaggtgact 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gaattcagctggaaggtacgactgctgcacggcatattgggaggccattcgaaggtgact 470
Query: 65 aattaatattaatcaaacctcagtgggtagtgtctccactctgtgttgtccatagctttt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 aattaatattaatcaaacctcagtgggtagtgtctccactctgtgttgtccatagctttt 410
Query: 125 ctatcattctatgtaatttaatgaatttatacatatttttattttctaccctatttctct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ctatcattctatgtaatttaatgaatttatacatatttttattttctaccctatttctct 350
Query: 185 tctgttattctttctgtgctggcgagtgagctgagcaccttgggttaaagctggaccaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 tctgttattctttctgtgctggcgagtgagctgagcaccttgggttaaagctggaccaga 290
Query: 245 cagaacacatatgtgtgttgatggcttttctctggcccaa-------acagaccacagct 297
|||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 289 cagaacacatatgtgtgttgatggcttttctctggcccaaacagaccacagaccacagct 230
Query: 298 gattctataggctcgcatatattga--------atatatatatatatgtgtatatatata 349
||||||||||||||||||||||||| |||||||||||||| | ||||||||||
Sbjct: 229 gattctataggctcgcatatattgaatatatatatatatatatatatatatatatatata 170
Query: 350 tatatatatatatatatatgcatgcatgctgcagggttgtctgcaagcctttgataacaa 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 tatatatatatatatatatgcatgcatgctgcagggttgtctgcaagcctttgataacaa 110
Query: 410 atagaataatactgtttatatgcacatggggaaagacttgactatcagaaccgagctctt 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 atagaataatactgtttatatgcacatggggaaagacttgactatcagaaccgagctctt 50
Query: 470 cacggcataattacaacttgctgagcaccgtggctctggtgaaca 514
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49 cacggcataattacaacttgctgagcaccgtggctctggtgaaca 5
Score = 80.0 bits (41), Expect = 4e-19
Identities = 52/57 (91%), Gaps = 3/57 (5%)
Strand = Plus / Plus
Query: 312 gcatatattgaatatatatatatatgtgtatatatatatatatatatatatatatat 368
|||||||| |||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 149 gcatatat---atatatatatatatatatatatatatatatatatatatatatatat 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 85
Number of extensions: 30
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 8
Length of query: 514
Length of database: 921
Length adjustment: 10
Effective length of query: 504
Effective length of database: 911
Effective search space: 459144
Effective search space used: 459144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no351_b01.g1 MSMg01no351_b01.g1 CHROMAT_FILE:
MSMg01no351_b01.g1 PHD_FILE: MSMg01no351_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:13 2005
(541 letters)
>mm_chr9_29896736_29897682
Length = 947
Score = 984 bits (509), Expect = 0.0
Identities = 535/547 (97%), Gaps = 7/547 (1%)
Strand = Plus / Plus
Query: 1 actggccacatgtaggactgcagctatggaggattttaatgatgaacaaggacagccttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actggccacatgtaggactgcagctatggaggattttaatgatgaacaaggacagccttt 260
Query: 61 tcccttgctcaggtgcttggggagagctgattttgcatgaggagctgttcctgaggaaag 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccccttgctcaggtgcttggggagagctgattttgcatgaggagctgttcctgaggaaag 320
Query: 121 gactaaaggaaggagaaacctgtgattaagggaggagggaaagaaacatttgttgagatt 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gactaaaggaaggagaaacccgtgattaagggaggagggaaagaaacatttgttgagatt 380
Query: 181 taccaagcggtgccaggctcaggcctcaatgctgtatacctgttacttcttccaattttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taccaagcggtgccaggctcaggcctcaatgctgtatacctgttacttcttccaattttc 440
Query: 241 acacaccccatccccatcatttcaag------ctgttttacctcagtcaaagacaaagaa 294
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 acacaccccatccccatcatttcaagtagatgctgttttacctcagtcaaagacaaagaa 500
Query: 295 gtccagagaaacgggatggtttgtccagagccctatagcactgaagtagctgggcttggt 354
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtccagagaaacaggatggtttgtccagagccctatagcactgaagtagctgggcttggt 560
Query: 355 gtcaaggtggctatcaagtgagatgctaacaacaggtatagaacttgccatgggaggctc 414
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtcaaggtgactatcaagtgagatgctaacaacaggtatagaacttgccatgggaggctc 620
Query: 415 atagtgagtgcaagccagcacatcttactaggtctagtggttcattttatattgctataa 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atagtgagtgcaagccagcacatcttactaggtctagtggttcattttatattgctataa 680
Query: 475 taaaatattaaatatacaataaattataaagaagtgtctctgactcacagtttctgaggc 534
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 681 taaa-tattaaatatacaataaattataaagaggtgtctctgactcacagtttctgaggc 739
Query: 535 tggaaat 541
|||||||
Sbjct: 740 tggaaat 746
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 947
Length adjustment: 10
Effective length of query: 531
Effective length of database: 937
Effective search space: 497547
Effective search space used: 497547
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
