Query= MSMg01no351_j22.b1 MSMg01no351_j22.b1 CHROMAT_FILE:
MSMg01no351_j22.b1 PHD_FILE: MSMg01no351_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:55 2005
(488 letters)
>mm_chr9_122723234_122724123
Length = 890
Score = 828 bits (428), Expect = 0.0
Identities = 438/442 (99%), Gaps = 2/442 (0%)
Strand = Plus / Minus
Query: 4 ggaattctgggctgttttttctcttatataaaatgtaagctgagttggtttcaaagattt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 442 ggaattctgggctgttttttctcttatataaaatgtaagctgagttggtttcagagattt 383
Query: 64 gaagcctggtttctggagattttctaaatagacacttaatctcttaagagaattttcatt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gaagcctggtttctggagattttctaaatagacacttaatctcttaagagaattttcatt 323
Query: 124 gacttcctagaaaaaaaa--gggggggtatttacatgtgagtaaagaaagaagaaactat 181
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gacttcctagaaaaaaaagggggggggtatttacatgtgagtaaagaaagaagaaactat 263
Query: 182 tatgtggtctttacatatattgaagatattaaataatttactgttaaaaatgctgaggga 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tatgtggtctttacatatattgaagatattaaataatttactgttaaaaatgctgaggga 203
Query: 242 acctagcctggtggtataagactttaatcacagcacttggaggtagaaacaggcagatct 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 acctagcctggtggtataagactttaatcacagcacttggaggtagaaacaggcagatct 143
Query: 302 tggtgagttccaaaccactgtttcaaaacaaaacaaaacaccctaaaaacaaccaaccaa 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 tggtgagttccaaaccactgtttcaaaacaaaacaaaacaccctaaaaacaaccaaccaa 83
Query: 362 cccaaaacagagctatacagtgagacactgctttgttttgttttttaaaaaaaattgaga 421
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 cccaaaacaaagctatacagtgagacactgctttgttttgttttttaaaaaaaattgaga 23
Query: 422 gctggaaagatggcttaatggt 443
||||||||||||||||||||||
Sbjct: 22 gctggaaagatggcttaatggt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 890
Length adjustment: 10
Effective length of query: 478
Effective length of database: 880
Effective search space: 420640
Effective search space used: 420640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no351_j22.g1 MSMg01no351_j22.g1 CHROMAT_FILE:
MSMg01no351_j22.g1 PHD_FILE: MSMg01no351_j22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:55 2005
(429 letters)
>mm_chr9_122507612_122508433
Length = 822
Score = 710 bits (367), Expect = 0.0
Identities = 407/429 (94%), Gaps = 17/429 (3%)
Strand = Plus / Plus
Query: 1 atctctcaaaaacaaagagatgccttagtgatctctttgctttatagtgtgtgggtcagt 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 atctctcaaaaacaaagagatgccttagtgatctctt-gctttatagtgtgtgggtcagt 259
Query: 61 gacttatctatctacttgagatgactagtcttaacaatttgacctgtcttgggaaaatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gacttatctatctacttgagatgactagtcttaacaatttgacctgtcttgggaaaatat 319
Query: 121 aaaccagcaatcacttcctagaaatcccaaaggctctaagcaactggatgttagtggcct 180
|||||||||||||| | |||||||||||||||||||||||||||| ||||||||||
Sbjct: 320 aaaccagcaatcac-----a-aaatcccaaaggctctaagcaactggatcttagtggcct 373
Query: 181 cgcagtggacatttgttagtttctttgactcttctccgtgtaaccaccgggtgatcagtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 cgcagtggacatttgttagtttctttgactcttctccgtgtaaccaccgggtgatcagtg 433
Query: 241 accatggcttgtgtagactctaatatgggatgaagttccatgtcatatctcaaatttctg 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 434 accatggcttgtgtagactctaatatgggatgaagttccatgtcatatctcagatttctg 493
Query: 301 taccagtctctggatagcagatgggccaagcatactttccctttgtgcttcaaggatgac 360
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 494 caccagtctctggatagcagatgggctaagcatactttccctttgtgcttcaaggatga- 552
Query: 361 cacaaggtcagagtgcacagtgaggtcaaaaagcacagcctcatggagacatctttgcgt 420
||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 553 ---------agagtgcacagtgaggtcaaagagcacagcctcatggagacatctttgcgt 603
Query: 421 gtttagaca 429
|||||||||
Sbjct: 604 gtttagaca 612
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 822
Length adjustment: 9
Effective length of query: 420
Effective length of database: 813
Effective search space: 341460
Effective search space used: 341460
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
