Query= MSMg01no352_k14.b1 MSMg01no352_k14.b1 CHROMAT_FILE:
MSMg01no352_k14.b1 PHD_FILE: MSMg01no352_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:17 2005
(193 letters)
>mm_chr9_119287340_119287932
Length = 593
Score = 271 bits (140), Expect = 2e-77
Identities = 178/194 (91%), Gaps = 10/194 (5%)
Strand = Plus / Minus
Query: 4 ggaattctttatta---tccagtaagaatcaggtttggtgactcacatccatattcctgt 60
||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 359 ggaattcttta--aaagtccagtaagaatcaggtttggtgactcacatccatatttctgt 302
Query: 61 acctgagaggctgggg-caatgagactgataagtatatgaggtcagtctggactatgtag 119
|||||||||||||||| ||| |||||||||||| ||||||||||| |||| ||||||||
Sbjct: 301 acctgagaggctggggacaacgagactgataag--tatgaggtcagcctgggctatgtag 244
Query: 120 taagatataggccttcagaaaccccgtcctcaaaaaaaaaaagtgtgtgtgtgtgtgtgt 179
|||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 243 taagatctaggccttcagaaaccccgccctc--aaaaaaaaagtgtgtgtgtgtgtgtgt 186
Query: 180 gtgtgtgtgtgtgt 193
||||||||||||||
Sbjct: 185 gtgtgtgtgtgtgt 172
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 593
Length adjustment: 8
Effective length of query: 185
Effective length of database: 585
Effective search space: 108225
Effective search space used: 108225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no352_k14.g1 MSMg01no352_k14.g1 CHROMAT_FILE:
MSMg01no352_k14.g1 PHD_FILE: MSMg01no352_k14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:17 2005
(395 letters)
>mm_chr9_119106582_119107376
Length = 795
Score = 725 bits (375), Expect = 0.0
Identities = 390/395 (98%)
Strand = Plus / Plus
Query: 1 tttgtttagtcttaggcagggtgccgcgtagcccaggatgtactcaaactcacgttatag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtttagtcttaggcagggtgccgcgtagcccaggatgtactcaaactcacgttatag 260
Query: 61 gcaggatgaccttgaacaacccatcctcctgcctctgtctcctgagcaatgggattatag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaggatgaccttgaacaacccatcctcctgcctctgtctcctgagcaatgggattatag 320
Query: 121 gcatgtgtcacaacaccttgctctgtgtattagtgtttaaaacaactactccttggaacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcatgtgtcacaacaccttgctctgtgtattagtgtttaaaacaactactccttggaacc 380
Query: 181 agaatgtctaccattaaactatttggacttaattacctaatatatagaactgctggattg 240
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaatgcctaccattaaattatttggacttaattacctaatatatagaactgctggattg 440
Query: 241 tttttttctggcacagagaccaccgtgtaaaacgataagaatgtaaaagttgtaaacttc 300
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 tttttttctggcacagagaccaccgtgtaaaactataagaatgtaaaagttgtaaacttc 500
Query: 301 tgatagaactctgattgctgcttcctgacaaacagactgtttcctgcgtaggctcctcca 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 tgatagaactctgattgctgcttcctgacaaacagactgtttcctgtgtaggctcctcca 560
Query: 361 gccttaccacgttttcacatatagctgcccagttc 395
|||||||||||||||||||||| ||||||||||||
Sbjct: 561 gccttaccacgttttcacatatggctgcccagttc 595
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space: 303396
Effective search space used: 303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
