BAC Information

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BAC

Clone NameMSMg01-352K15
Chromosome9 (Build37)
Map Location 39,599,956 - 39,782,181
singlet/doubletdoublet
Overlap geneOlfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1
Upstream geneOlfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968
Downstream geneOlfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b, LOC270148, 9030425E11Rik, LOC100043076, LOC100043071, Hspa8, Bsx, 4931429I11Rik, Crtam
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352K15.T7 (MSMg01no352_k15.b1)MSMg01-352K15.TJ (MSMg01no352_k15.g1)
ACCAG463735AG463736
length753762
length of high quality
(start - end)		523 (50 - 572)476 (77 - 552)
definitionCHROMAT_FILE: MSMg01no352_k15.b1 PHD_FILE: MSMg01no352_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:17 2005CHROMAT_FILE: MSMg01no352_k15.g1 PHD_FILE: MSMg01no352_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:17 2005
singlet/doubletdoubletdoublet
BLAST hitpluralplural
Map location.(39,781,663 - 39,782,181)(39,599,956 - 39,600,431)
sequence
NNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCCTATTACGATGGACTACCTAGTACGGCAAGGCCGAACCA
TCTCATACCAGGGTTGTGTCTCCCAAGTCTTCTTCTATCACACTCTGGGT
GGCACAGAATGTTTTCTATATACAGTGATGGCTTATGACCGCTTTGTGGC
TATTTGTCACCCTATGAGATACACAGTCATTATGAACCACAGGGTGTGTA
CCTGCCTCACAGTGGGCACTTGGGTTGGGGGCTTTGTCCATGGGAGCATC
CTCACATTTCTTATCTTTAAGTTACCCTACTGTGGTCCGAATAAAGTGAA
CAGTTTCTTCTGTGACATTCCTGTGGTGCTGTCCCTGGCATGTGCAGATA
CCTCTCTAGCAAGAACTGTGAGTTTTACCAATGTTGGTGTCGTTGCGCTC
ACATGTTTTCTTCTCATTCTCACTTCTTACACTCGTATTGTGATCTCCAT
CCTGAAAATCCGATCCTCGGAAGGCAGGCGCAGAGCCTTCTCAACCTGCA
GTGCCCACCTGACATCTATCATCTTGGTGTATGGCCCCGCGATTCTTGTG
TATCTCAGACCCCGTTCTATTCCCTGGTTGAAATTCTGGTTGTCAGGCCG
TTAACCACGTCATTTCGCTCTTCCTTCAATTCCCCTGATTTCTTCCCCGT
ACGTATCATTGATGTTCTCTCACCCCCCGTAATAACCTTCATTCCTCTTT
GCC

NCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGGGAGACAAAGTATGCATGGATG
GTCATTATCTTTCCTTTTGATTCTTTTATTTCCTGACACTATAATATAAT
TGTATCTTTTCCCCCTTCCTTTCTTCCCTCCAAGTTCTCAGATAAATTCC
TCATTGCTTTCTCTCGAATTCATGGCTTCTTTTCTCATTCATTGCTATAT
TATCTTCATCTATATAAATATCTATGCATATATACAACCTGACTACTCTG
TGCAATGTTACTTGCATCTGTGTTTTCAGGGCTGACCATTTGATGTTCAG
TGTAGTCTTCTCTAAGGAATTACATTTCAAACCCATGTGTGTCATGAGAC
ACAGAACTATGTGAACATGAAGCTCCTTACCTTTTAAAGAATTCTTTATT
TATAAAGAATATAATACAATATACCCATTTATATTTTTATAATTTTAAAA
TTATAATACATTTATATGTTATAATAATACAATTTTATATTACATAATCT
ATAATTATACCATTATAATAAATGGCGGGCTCTTCTCTGCATAAAACTAT
TTCTCCTAATCAGCATTTCCTAATTTGCCCGGCTCTTTGTGTAAAAATAA
AAACTCAATGTTTTTCCTCAGCCCACCTATCCTGTTAAGGATAATTTTTC
CTCTTTTTTCTCCCCGTTTACCACCCCATTGTTCCTTCCTACCCAATGCT
CAACCTAAAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_k15.b1 MSMg01no352_k15.b1 CHROMAT_FILE:
MSMg01no352_k15.b1 PHD_FILE: MSMg01no352_k15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:17 2005
         (523 letters)



>mm_chr9_39781459_39782381
          Length = 923

 Score =  949 bits (491), Expect = 0.0
 Identities = 512/519 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcctattacgatggactacctagtacggcaaggccgaaccatctcataccaggg 64
           |||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 gaattctcctaagatgatggactacctagtacggcaaggccgaaccatctcataccaggg 664

                                                                       
Query: 65  ttgtgtctcccaagtcttcttctatcacactctgggtggcacagaatgttttctatatac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ttgtgtctcccaagtcttcttctatcacactctgggtggcacagaatgttttctatatac 604

                                                                       
Query: 125 agtgatggcttatgaccgctttgtggctatttgtcaccctatgagatacacagtcattat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 agtgatggcttatgaccgctttgtggctatttgtcaccctatgagatacacagtcattat 544

                                                                       
Query: 185 gaaccacagggtgtgtacctgcctcacagtgggcacttgggttgggggctttgtccatgg 244
           |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 543 gaaccacagggtgtgtacctgcctcacactgggcacttgggttggaggctttgtccatgg 484

                                                                       
Query: 245 gagcatcctcacatttcttatctttaagttaccctactgtggtccgaataaagtgaacag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 483 gagcatcctcacatttcttatctttaagttaccctactgtggtccgaataaggtgaacag 424

                                                                       
Query: 305 tttcttctgtgacattcctgtggtgctgtccctggcatgtgcagatacctctctagcaag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tttcttctgtgacattcctgtggtgctgtccctggcatgtgcagatacctctctagcaag 364

                                                                       
Query: 365 aactgtgagttttaccaatgttggtgtcgttgcgctcacatgttttcttctcattctcac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 aactgtgagttttaccaatgttggtgtcgttgcgctcacatgttttcttctcattctcac 304

                                                                       
Query: 425 ttcttacactcgtattgtgatctccatcctgaaaatccgatcctcggaaggcaggcgcag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ttcttacactcgtattgtgatctccatcctgaaaatccgatcctcggaaggcaggcgcag 244

                                                  
Query: 485 agccttctcaacctgcagtgcccacctgacatctatcat 523
           ||||||||| |||||||||||||||||||||||||||||
Sbjct: 243 agccttctcgacctgcagtgcccacctgacatctatcat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space:   468369
Effective search space used:   468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no352_k15.g1 MSMg01no352_k15.g1 CHROMAT_FILE:
MSMg01no352_k15.g1 PHD_FILE: MSMg01no352_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:17 2005
         (476 letters)



>mm_chr9_39599756_39600631
          Length = 876

 Score =  920 bits (476), Expect = 0.0
 Identities = 476/476 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggagacaaagtatgcatggatggtcattatctttccttttgattcttttatttcctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggagacaaagtatgcatggatggtcattatctttccttttgattcttttatttcctga 260

                                                                       
Query: 61  cactataatataattgtatcttttcccccttcctttcttccctccaagttctcagataaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cactataatataattgtatcttttcccccttcctttcttccctccaagttctcagataaa 320

                                                                       
Query: 121 ttcctcattgctttctctcgaattcatggcttcttttctcattcattgctatattatctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcctcattgctttctctcgaattcatggcttcttttctcattcattgctatattatctt 380

                                                                       
Query: 181 catctatataaatatctatgcatatatacaacctgactactctgtgcaatgttacttgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catctatataaatatctatgcatatatacaacctgactactctgtgcaatgttacttgca 440

                                                                       
Query: 241 tctgtgttttcagggctgaccatttgatgttcagtgtagtcttctctaaggaattacatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctgtgttttcagggctgaccatttgatgttcagtgtagtcttctctaaggaattacatt 500

                                                                       
Query: 301 tcaaacccatgtgtgtcatgagacacagaactatgtgaacatgaagctccttacctttta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcaaacccatgtgtgtcatgagacacagaactatgtgaacatgaagctccttacctttta 560

                                                                       
Query: 361 aagaattctttatttataaagaatataatacaatatacccatttatatttttataatttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagaattctttatttataaagaatataatacaatatacccatttatatttttataatttt 620

                                                                   
Query: 421 aaaattataatacatttatatgttataataatacaattttatattacataatctat 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaattataatacatttatatgttataataatacaattttatattacataatctat 676


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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