Query= MSMg01no352_l01.b1 MSMg01no352_l01.b1 CHROMAT_FILE:
MSMg01no352_l01.b1 PHD_FILE: MSMg01no352_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:19 2005
(460 letters)
>mm_chr9_93479496_93480356
Length = 861
Score = 847 bits (438), Expect = 0.0
Identities = 453/458 (98%), Gaps = 3/458 (0%)
Strand = Plus / Minus
Query: 5 gaattctttaagt-acatcatcagttaatggacttagagggctgagacaaaaagctccca 63
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gaattctttaagtaaaatcatcagttaatggacttagagggctgagacaaaaagctccca 602
Query: 64 tcagcattcagcctatgtaccacactaatctacccttgagggcacttttttttttctcta 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tcagcattcagcctatgtaccacactaatctacccttgagggcacttttttttttctcta 542
Query: 124 ccataaaaccttggagtagtttaaaccagccagcttttcattttcccaagagatagaggg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ccataaaaccttggagtagtttaaaccagccagcttttcattttcccaagagatagaggg 482
Query: 184 gagggagttaaattgcgactgcatcaaagagaatataagggaattctcaaaaaatattgt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gagggagttaaattgcgactgcatcaaagagaatataagggaattctcaaaaaatattgt 422
Query: 244 tattattatgtctccttggggaccagggaaataagtctcccaagaatgctggtgtattta 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tattattatgtctccttggggaccagggaaataagtctcccaagaatgctggtgtattta 362
Query: 304 gctggtaaagattctcttcacagtgaaagttggaattgaaattttacaggtatggctgtt 363
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 361 gctggtaaagattctcttcacagtgaaagttggaattgaaattttacacgtatggctgtt 302
Query: 364 tactttccttgtatttcagggttcccacacttggcttcacaaaatggtccactcatcagc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tactttccttgtatttcagggttcccacacttggcttcacaaaatggtccactcatcagc 242
Query: 424 aacagcagaaatggccctgacttaata-tgaaatggcc 460
|||||||||||||||||||||||| || ||||||||||
Sbjct: 241 aacagcagaaatggccctgactta-taatgaaatggcc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 861
Length adjustment: 10
Effective length of query: 450
Effective length of database: 851
Effective search space: 382950
Effective search space used: 382950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no352_l01.g1 MSMg01no352_l01.g1 CHROMAT_FILE:
MSMg01no352_l01.g1 PHD_FILE: MSMg01no352_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:20 2005
(430 letters)
>mm_chr9_93391891_93392722
Length = 832
Score = 754 bits (390), Expect = 0.0
Identities = 421/432 (97%), Gaps = 2/432 (0%)
Strand = Plus / Plus
Query: 1 agaggtggtaggactgtggaatatgcaagtagaaaagattaagaacggtatcagagacta 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 agaggtggtaggactgtggaatatgcaagtagaaaagatttagaacggtatcagagacta 260
Query: 61 ggaatgtgattttaacaaaatactatatgcatggatgaaaatgtgatagtgattttcatt 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 ggaatatgattttaacaaaatactatatgcatggatgaaaatgtgatagtgattttcgtt 320
Query: 121 ttctatatttaattcctggtaataaaaagaaaaaatg--atgagttatccatataaaatg 178
||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 321 ttctatatttaattcctggtaataaaaagaaaaaatgatatgagttatccatttaaaatg 380
Query: 179 agatatttgaagtaatatagctaaaatttataaatgcaattaaactgttttttcaggaac 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agatatttgaagtaatatagctaaaatttataaatgcaattaaactgttttttcaggaac 440
Query: 239 tttggaaaatcactcaacaagccaatatttattcttaatagccactataatcttgtttta 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttggaaaatcactcaacaagccaatatttattcttaatagccactataatcttgtttta 500
Query: 299 gtgttttcttaatggttattgcaagttgagaaacttaaagacctagaaattgaatgggta 358
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 501 gtgttttcttaatggttattgcaagttgaaaaacttaaagacctagaaattgaatgggta 560
Query: 359 tctccaacaagagacactattcagaatagtaggtaggcatgttcacaaaacttaaggact 418
|||||||||||||| || |||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 561 tctccaacaagagataccattcagaatagtagataggcatgttcgcaaaacttaaggact 620
Query: 419 cctgtgttagta 430
||||||||||||
Sbjct: 621 cctgtgttagta 632
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 832
Length adjustment: 9
Effective length of query: 421
Effective length of database: 823
Effective search space: 346483
Effective search space used: 346483
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
