BAC Information

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BAC

Clone NameMSMg01-353H14
Chromosome9 (Build37)
Map Location 64,899,977 - 64,900,448
singlet/doubletsinglet
Overlap geneDpp8
Upstream gene2600006L11Rik, Lctl, Zwilch, Rpl4, Snapc5, Map2k1, Uchl4, Tipin, Dis3l, Megf11, Rab11a, AI115600, F730015K02Rik, Slc24a1, 2010321M09Rik, Ptplad1
Downstream geneNope, Punc, Parp16, Cilp, Clpx, Pdcd7, Gm514, 5430433E21Rik, Rasl12, Ostb, Mtfmt, Spg21, Ankdd1a, Plekhq1, Pif1, LOC100041121, Rbpms2, Oaz2, Zfp609, LOC100041180, Trip4, 2810417H13Rik, Csnk1g1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353H14.T7 (MSMg01no353_h14.b1)MSMg01-353H14.TJ (MSMg01no353_h14.g1)
ACCAG464342AG464343
length762773
length of high quality
(start - end)		542 (50 - 591)472 (77 - 548)
definitionCHROMAT_FILE: MSMg01no353_h14.b1 PHD_FILE: MSMg01no353_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:21 2005CHROMAT_FILE: MSMg01no353_h14.g1 PHD_FILE: MSMg01no353_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGACGGTTGCGGTTATTATCTTGGTTGAGGTATGTGAAGAG
AATCTGACCTCACGCAGATAATGTAAGTAGAAATAGGAGGGCACTTAAGA
AGTCATTTTAGGATTGTGGATATTACTTTTTGGCATTGTCCCAAAGCTTG
GCAAGTAGTAGTTTCTTCTAACTTATTAGTAATGCAAAATATGAAACCTA
ATCAATAAAGTTTCCTTCTGTGTTCTATTAAAATCTGAAGGTCTCTCTTA
CTTAGTCTTGACTGAACATTAACTCATGCATGCGTGATCTTATAGCATTG
TGTATCGGTCACTTGCCCAGCAATGCTTCATTGAGGTTATAGTCAAATGT
CTTCTTCAATTTAAGAAAATCACTTGTTAATATCTATAGCATCAGAAGAG
TTTTAACATTTGTAGTGTGTGCGTGTATGTGTGCGTGTGCATGCATGTTG
GCATGTCCTCGCCGTGGTGCACAGGGAGAGGTCAGAGGACAGTTGCAGGA
GCCAGTTCTCTTCTTCAGTGCGGGTCCTGGGGACTGAACTCAGGTTATTA
GGTTTGACAGCAAGCACCTTTACTTGCTAGTGCAAAACCAAACCAACCAA
CCATCACGATATTTTTTGTTTAATTGTTTTACAAAGTTCATCTGTGGTGC
CCGACTCAAAACCAGTTCCCCCCAGAGGCCTCCCTTCCCAGCTACATTTC
CACGTTTTCTCC

NNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTGCATCTTCTCGTGACTTCCA
AGTCCCTTTTACAAGGACTTAAAGTTTATCCTTTTGGGAGGAAAAAAAAT
GTAAATGTGTGGTATATTTAAATATATTCACACCTATATACACATATACA
GGGCAAACATCTTGAAGGATTTTGACATGATATATCTTATATTTTGAGTT
ATTTAGTAAAACACAACATTTCCTTTAAAATGCCAAAAGGTTAGTTATAT
TGAATGGTTTATGTCAAAATATTGTTCTGTATAATAGTGGGCAAACGCGT
ATATTTGAAAATAAAAGTCCAAATCTAAGACATAGACTAAAATAGGTAGT
ATTTTTTATTGTCCTCTAAAGAAATATTGAGATGGCTAGCTGCCAACCAA
TGTTGATGTCATAAGATTTATTAATGGTTCCTAGCCGAGCACGAGCTGCC
CCCAGCTGGGTCTCCAGCACCGGTGTAACCGCTTACAACCATCTGCGACT
CCAGTTCCTAGGATCTGAACCCTTCTTCTGGCCTTTGCAGGTCCCAGGCA
CATACATGGTACACTTACATACATGCCGGAAAACCCCTATCCCTCCCCAA
TTATGAATAAATAAATTCTAAAAATACACAAAATGCACCCTACAATAACG
CTTTTTCGACCTTTTTCCTTATTATACATCGTCTTTTCACCTTTGTCTTT
GCCCTTTCTTCACCATAACACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_h14.g1 MSMg01no353_h14.g1 CHROMAT_FILE:
MSMg01no353_h14.g1 PHD_FILE: MSMg01no353_h14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:22 2005
         (472 letters)



>mm_chr9_64899777_64900648
          Length = 872

 Score =  897 bits (464), Expect = 0.0
 Identities = 470/472 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttgcatcttctcgtgacttccaagtcccttttacaaggacttaaagtttatccttttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 ttttgcatcttctcgtgacttccaagtcccttttacaaggacttaaagtttatccttttg 613

                                                                       
Query: 61  ggaggaaaaaaaatgtaaatgtgtggtatatttaaatatattcacacctatatacacata 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 612 ggaggaaaaaaaatgtaaatgtgtggtatatttaaatatattcacacttatatacacata 553

                                                                       
Query: 121 tacagggcaaacatcttgaaggattttgacatgatatatcttatattttgagttatttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tacagggcaaacatcttgaaggattttgacatgatatatcttatattttgagttatttag 493

                                                                       
Query: 181 taaaacacaacatttcctttaaaatgccaaaaggttagttatattgaatggtttatgtca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 taaaacacaacatttcctttaaaatgccaaaaggttagttatattgaatggtttatgtca 433

                                                                       
Query: 241 aaatattgttctgtataatagtgggcaaacgcgtatatttgaaaataaaagtccaaatct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aaatattgttctgtataatagtgggcaaacgcgtatatttgaaaataaaagtccaaatct 373

                                                                       
Query: 301 aagacatagactaaaataggtagtattttttattgtcctctaaagaaatattgagatggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aagacatagactaaaataggtagtattttttattgtcctctaaagaaatattgagatggc 313

                                                                       
Query: 361 tagctgccaaccaatgttgatgtcataagatttattaatggttcctagccgagcacgagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tagctgccaaccaatgttgatgtcataagatttattaatggttcctagccgagcacgagc 253

                                                               
Query: 421 tgcccccagctgggtctccagcaccggtgtaaccgcttacaaccatctgcga 472
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 252 tgcccccagctgggtctccagcaccggtgtagccgcttacaaccatctgcga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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