BAC Information

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BAC

Clone NameMSMg01-353J19
Chromosome9 (Build37)
Map Location 109,899,386 - 109,899,836
singlet/doubletsinglet
Overlap geneMtap4
Upstream genePfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14, LOC668758, EG382156, Fbxw16, Fbxw19, LOC635668, Fbxw15, EG382106, E330001B16Rik, C85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, LOC100049540
Downstream geneDhx30, Smarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353J19.T7 (MSMg01no353_j19.b1)MSMg01-353J19.TJ (MSMg01no353_j19.g1)
ACCAG464447AG464448
length750771
length of high quality
(start - end)		457 (52 - 508)394 (83 - 476)
definitionCHROMAT_FILE: MSMg01no353_j19.b1 PHD_FILE: MSMg01no353_j19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:32 2005CHROMAT_FILE: MSMg01no353_j19.g1 PHD_FILE: MSMg01no353_j19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTCTCTTCCCAGATGTCCTACCATCTTACTTCCTGCCT
AAGCCATAGGCAGTAGACAGACGATGCATCCATACAATATCCAAGTTGTT
CTCTTTAACCTATGCTTATCTGAGAGAGGATTTTGTAAAACTCTTTCTCT
GTCTATCCTGTGTCCTATCCTTCCCCTAACATTTGCTAGTGATGTCACTT
TCAGATTATTTCCTGATTACTGGAGAGGAGGAAGGGAGGAGGAAGACGTG
GAGGATGAGAATGTATGTTTGCATAATGCCTATCTGCCACACTGGCCTCT
TTCCCACCCTCACCCCTCTCTGCCTGCATTCTGGCTTTTCAGTGGTATTT
TACTCTGTGGTGATATTAGCTATTTTAAATAATGTCACAGTACACTCTAT
ATTCATTTTATGTTTTTATTTTCTTTCATGAATTAAATACTGATAATAAA
TTGGCAAGTTAGTATTTTTCAGTTGATAAATTGTCTGACTATTCAAAAGT
TTATTTTCATCATTTAAAATGAGATTTTCTGGTTGTCTACCCCTTTAGGC
CCGGAGCCAATATCCAATTATAAAGTAGTTCCCCACTTTCCGGCGCCACA
AACCCCATTTTTTTAAAATTCCCCCTTTTAAAAATTTTATTTTAAAAAGA
AGAATTTTTACAAAAAGTATCCTTCTTACCCAGAAAGAAGAATCTACAGG


NNNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTGAATTCTAGAGAAA
TCAGGAATGGCAATTGGAAGGTAGAGTAGATAGGGTTCCCTGTTTGTTTT
TTCCTTCCTTTTTTAAAAAAAGTATTTATTTATTTATTTTTAAACATTTA
TTTATTATTGTATGTATAAGTACCCTATAGCTGTCTTCAGACACTCCAGA
AGAGGGCATCAGATCTCATTATAGATGGTTGTGAACCACCATGTGGTTGC
TGGGAATTGAACTCAGGACTTCTGGAAGAACATGTCAGTGCTCTTAAGTA
CTAAGCCATCTCTCCAGCCCTTCCTCCTTTTATAATTAATTTTTATTAAT
ATTGTGTGGAGGAGCAAGTGTGCCACAGCCAACATGTGGAGGTGAGAGAA
CAGTATGTCTGTTGGTTCTTTCCATTCACCAGGTGGGTCCTGGGGTTGAA
CTTAAGTTGTCAGGCTTATTGGCTGATGGCTTTATACTGCGGTATCTTAC
TAGCACTACTTTTATCTTTGGAAGGTGGAACAAAATCCAAAACCCCCAAG
GTTTCCGAAATTAGGTGGCAACTATTTACCGGCATGAAAACTTTTTTTCC
GGATAATGGCGAGAAAGCCGCTTCTTTAACCCTTCCTTTCTCATAATTGC
GATGGTCCTCCTTTTCCCTTTTTCGTATTTGCCTTCTTTTTCAATCCCTT
TGTTTTTCATCCCCCTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_j19.b1 MSMg01no353_j19.b1 CHROMAT_FILE:
MSMg01no353_j19.b1 PHD_FILE: MSMg01no353_j19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:32 2005
         (457 letters)



>mm_chr9_109899182_109900036
          Length = 855

 Score =  833 bits (431), Expect = 0.0
 Identities = 447/453 (98%), Gaps = 2/453 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttctcttcccagatgtcctaccatcttacttcctgcctaagccataggcagta 64
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 205 gaattctttctcttcccagatgtcctaccatcttacttcctgcctaaaccataggcagta 264

                                                                       
Query: 65  gacagacgatgcatccatacaatatccaagttgttctctttaacctatgcttatctgaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gacagacgatgcatccatacaatatccaagttgttctctttaacctatgcttatctgaga 324

                                                                       
Query: 125 gaggattttgtaaaactctttctctgtctatcctgtgtcctatccttcccctaacatttg 184
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 325 gaggattttgtaaaactctttctccgtctatcctgtgtcctatccttcccctaacatttg 384

                                                                       
Query: 185 ctagtgatgtcactttcagattatttcctgattactggagaggaggaagggaggaggaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctagtgatgtcactttcagattatttcctgattactggagaggaggaagggaggaggaag 444

                                                                       
Query: 245 acgtggaggatgagaatgtatgtttgcataatgcctatctgccacactggcctctttccc 304
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acgtagaggatgagaatgtatgtttgcataatgcctatctgccacactggcctctttccc 504

                                                                       
Query: 305 accctcacccctctctgcctgcattctggcttttcagtggtattttactctgtggtgata 364
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 505 accctcacccctctctgcctgcattctgacttttcagtggtattttactctgtggtgata 564

                                                                       
Query: 365 ttagctattttaaataatgtcacagtacactctatattcattttatgtttttattttctt 424
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 565 ttagctattttaaataatgtcacagtacact--atattcattttatgtttttattttctt 622

                                            
Query: 425 tcatgaattaaatactgataataaattggcaag 457
           |||||||||||||||||||||||||||||||||
Sbjct: 623 tcatgaattaaatactgataataaattggcaag 655


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 855
Length adjustment: 10
Effective length of query: 447
Effective length of database: 845
Effective search space:   377715
Effective search space used:   377715
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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