BAC Information

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BAC

Clone NameMSMg01-353K02
Chromosome9 (Build37)
Map Location 45,888,827 - 45,889,076
singlet/doubletsinglet
Overlap geneBC033915
Upstream geneAmica1, Scn2b, Scn4b, Tmprss4, Il10ra, Tmprss13, Fxyd6, Fxyd2, Dscaml1, Cep164, LOC640094, Bace1, Rnf214, Pcsk7, Tagln, Sidt2, Pafah1b2, 2610005M20Rik
Downstream geneApoa1, Apoc3, Apoa4, Apoa5, Zfp259, Bud13, 4931429L15Rik, LOC100042722, EG667890, 2900052N01Rik, D930036J05
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353K02.T7 (MSMg01no353_k02.b1)MSMg01-353K02.TJ (MSMg01no353_k02.g1)
ACCAG464461AG464462
length777788
length of high quality
(start - end)
250 (80 - 329)244 (80 - 323)
definitionCHROMAT_FILE: MSMg01no353_k02.b1 PHD_FILE: MSMg01no353_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:33 2005CHROMAT_FILE: MSMg01no353_k02.g1 PHD_FILE: MSMg01no353_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCTTCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAA
TCCGCGGAATTCTTTATTTTGTACCCAACAAGCCATTTTTTAATTGTGGG
GCACTAATTTGAGACTATTCCATCCCCTAACAAAACCCAAAGATATTCAA
GACCCTTGTCCAACATGGTATATTTACATGTACCATAATATGCCTCTAAT
ATTAATGATCTTAAAATCTTCTGGACCTACAATTGGATGGCTCCTCAGAT
GAGGAGCTCACGGTCACAGGGCCCACCTGCACTGCTCTTTTACTGAACAT
CTGATTGGTGAGTTCTTTTTCCCACTCTGTTTTAAGTTTGGCCATTCTAT
AACACGGCTCAGGCTGGCTGTGACCTCCTGACCCTTCTATCTCGGCCTCC
CAAGGTCTTGGATTATACCACATTACCATAGTTTTCAGATGAGCTTAAAG
AAGTACCAGATGACAGGTACTGAGACTGCTCTACTCTCTGTATCACTCCG
TACGCTTTTATTTATTCATTTATTCATTTATCTATTTACTTATTTACTTA
TCTATTCATTTCATTTATTTATTAAGTTTAATTTAATCTCCTCGCCTTTC
CTCTCCCTGCTTTACTCTCTCCTTCTTTTTGCCCCATTCTTCTCCATACT
TTCTTTTTCCCACTCCTTTTATTATTTCCACAATTAACCATTTTTTCGTA
CATCTTTCTCCTCTTTATATTTTTTTTCCATTCCCATACCCTATATCCAC
ATAAAAATTCATCTCCTCAATTTTACG
TCCTTCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTACAGAAATATCATGGGAAAAGAATATTGTAAAG
ACTTGGGGACGCTTCATCTGCCAGAGTTTAAGCTTGTGAGGTAAGATGGA
GCACCTTTAACCACAGCCCTGGGGCGGCAGAAGCAGGCCAACCTATGTGC
ACTTGAGGCCAGCCTGGCCTAAACAATGAGCTCCAGGTTATTCAAAGTTG
TACAGTGAGACTCTATTTTGAAAGCAAAACAAAATCTATTTAAACCTTCA
CAGTGCTTGGAAGGTGAGGACAGGATTTTTTTGAGCTAACGGTCACCCTA
CTACATTGTGAATTCAAGGTCAGGCTAGGCTCCATAAGACCCTGTTTCAT
GCAAAGTACAAGTCCCATGTATAGGAGGTAATTATAGGAGGCTCACTCCT
GCACTTACAGACATGCCTTTATACCACTGCTAGGATTTCAAGGCCTGGCC
TGTCCACTGAACCAGCTTCACCTTTGCCTTTCATCGACCGCATCGTCCCT
TGCTGTCCCATTCCCATCCCTTTCCCCTTGCCCTTCCCCTTGGTTCTGAG
GTACAATCTTATTCCCCTTCCCTTTGTAAATCCCTTTCCCTTCCTTTCCT
TTACTCTTCCTTTCCCTTTCCATTCCGTCCTTTCCTTTTTTTTCCGCCTG
TTTTTTCTGTCCCTTCCCCCTTCCCCTTTTCCCCTTTCCCCCCTTTCTAT
CTCTTTTTCTATATACACTCTCCTTTTATTTACCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_k02.b1 MSMg01no353_k02.b1 CHROMAT_FILE:
MSMg01no353_k02.b1 PHD_FILE: MSMg01no353_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:33 2005
         (250 letters)



>mm_chr9_45888627_45889276
          Length = 650

 Score =  468 bits (242), Expect = e-136
 Identities = 248/250 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagccattttttaattgtggggcactaatttgagactattccatcccctaacaaaaccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 aagccattttttaattgtggggcactaatttgagactattccatcccctaacaaaaccca 391

                                                                       
Query: 61  aagatattcaagacccttgtccaacatggtatatttacatgtaccataatatgcctctaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 aagatattcaagacccttgtccaacatggtatatttacatgtaccataatatgcctctaa 331

                                                                       
Query: 121 tattaatgatcttaaaatcttctggacctacaattggatggctcctcagatgaggagctc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 330 tattaatgatcttaaaatcttctggacctacaattggatggctcctcagatgaggaactc 271

                                                                       
Query: 181 acggtcacagggcccacctgcactgctcttttactgaacatctgattggtgagttctttt 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 acgggcacagggcccacctgcactgctcttttactgaacatctgattggtgagttctttt 211

                     
Query: 241 tcccactctg 250
           ||||||||||
Sbjct: 210 tcccactctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)