BAC Information

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BAC

Clone NameMSMg01-353K11
Chromosome9 (Build37)
Map Location 120,117,808 - 120,151,717
singlet/doubletdoublet
Overlap genenone
Upstream geneSlc22a13, 9330176C04Rik, Oxsr1, Myd88, Acaa1a, Xylb, Acvr2b, Endogl1, Scn5a, Scn10a, Scn11a, LOC100039837, Wdr48, Gorasp1, Ttc21a, Axud1, Cmya1, Cx3cr1, Ccr8, Slc25a38, Rpsa, Snora62, EG546166, Mobp
Downstream geneLOC100039898, Myrip, LOC666044, Eif1b, LOC638068, Entpd3, Rpl14, 5830454E08Rik, LOC100040010, Ctnnb1, Ulk4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353K11.T7 (MSMg01no353_k11.b1)MSMg01-353K11.TJ (MSMg01no353_k11.g1)
ACCAG464479AG464480
length773764
length of high quality
(start - end)		498 (65 - 562)425 (83 - 507)
definitionCHROMAT_FILE: MSMg01no353_k11.b1 PHD_FILE: MSMg01no353_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:35 2005CHROMAT_FILE: MSMg01no353_k11.g1 PHD_FILE: MSMg01no353_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,151,220 - 120,151,717)(120,117,808 - 120,118,232)
sequence
NNNNTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXGCTCTCTGGGCTCTTTTCTGGGACAGCAGTTTCCAG
CATGAGCTGAGAGTAAATGAGGCAAGGACAACGCATCTATGTTATCTTGA
TGGCACCTCCTGTCCAAAGCAAGGATTTGGAACCTCTTCCCTTCTCAAGT
CCTATTCCTCTAGACAAAATACTACGGGTATGGGTTCTTTGGCTTAAAGA
TAAAGATTGTAAACACAGGGAGGGAGACAGGGAGGGGGAGAAAGAGAAAG
AGGAGCATCAGGGTGCCTGGTGGAAACATTGTTTCATGTGACACTTGTTC
TCCGGGCAGATGGAAAAGGCAGACAAGAACACTCACTCCAGCCAGGTGGA
ATTGGAGACACTTCACCAAGCTATCCTCTGGCTTGGTCCCTTAAGTCACT
CCATGGACCATCTGCTCTATTCCCCACTCTGAGTCCATCTTAATAGCTTA
TATTAATACACAGAATCCTCTCTCCCTCTCTTCCTCTCTTCCTCTCTCCC
TCATCCCTCTGTCTCTGTCTGTCCATCTCTTTCTGTGTGGGCCTCTGGCT
CTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTTT
GCCCCTGCCTCTGCCTCTGCCCCTGGCCCTGGGTTTTTTTGGGTCCGGGT
CTAACCCCGGACCAGGGTTTTGCCATGGCAATGGTTTTTGCCTCTGGTTC
TGGTTTTTCCGTCCCCGGCACCG

NNNNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTCCTCAATAGTGTGTG
TTCTTAACCTCTGAGCGTCTGCGCAGCCACAATTTCAGAGTTTTTTGGCC
CATGAGTCCAGGCTGGCTCTGGGCCTGCGTTGAGGAAGAGTAATGTGTGA
GTATCCAGGGTGGAGCACAGGCCCTCACCTGAAGGCAGCCTGGAGGCAGA
GACAGAGTGACAGGGACACAGAGACAGTGAGAGAGACAGAGGGGATGGGG
TGGACTGAGGGCCTGCCACTGAGCCTGGCTGATGCCCCCTACGGTGGTGC
CTCGGGCAGCGGGCCAAGCAAGTGGCTTTTGTGTCATTTAAAGCCCAGCA
CTGACCTGATGAGCCTCATCTACGTTGGAGGCAACACATTTTGCTCCTTG
CTTCAGGAATGCTAACCTTGGGCTGTGGAGACGGCACAGAGCTTAAGTGC
CTCCCTCACAAACTGGAGGACCGGAGTTTAGGTCCCCAGAAACCANNGGA
TGTTGGGTGCGTGGTCCCGGTCTGTGATTCCCCATTGTACTGCAATTATC
GCTTAAAACCCCTTTTGGTTATGCTCCGGTTTAATTAGAAACCCTCCGAT
TAATCCCCCCTTTTTTGTGTTCCCTTCTTCCACACCCATTTTTTTTCCTT
TTTTTCCCTTGCTTCCACTTTACCCGCCCCCTCTTCTTTCCTGCCTTTTC
TTCTCTTCTTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_k11.b1 MSMg01no353_k11.b1 CHROMAT_FILE:
MSMg01no353_k11.b1 PHD_FILE: MSMg01no353_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:35 2005
         (498 letters)



>mm_chr9_120151066_120151963
          Length = 898

 Score =  924 bits (478), Expect = 0.0
 Identities = 493/498 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctctctgggctcttttctgggacagcagtttccagcatgagctgagagtaaatgaggca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 gctctctgggctcttttctgggacagcagtttccagcatgagctgagagtaaatgaggca 593

                                                                       
Query: 61  aggacaacgcatctatgttatcttgatggcacctcctgtccaaagcaaggatttggaacc 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 aggacaacgcatctatgtcatcttgatggcacctcctgtccaaagcaaggatttggaacc 533

                                                                       
Query: 121 tcttcccttctcaagtcctattcctctagacaaaatactacgggtatgggttctttggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tcttcccttctcaagtcctattcctctagacaaaatactacgggtatgggttctttggct 473

                                                                       
Query: 181 taaagataaagattgtaaacacagggagggagacagggagggggagaaagagaaagagga 240
           |||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct: 472 taaagataaagattgtaagcacagggagggagacagggaaggggagaatgagaaagagga 413

                                                                       
Query: 241 gcatcagggtgcctggtggaaacattgtttcatgtgacacttgttctccgggcagatgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gcatcagggtgcctggtggaaacattgtttcatgtgacacttgttctccgggcagatgga 353

                                                                       
Query: 301 aaaggcagacaagaacactcactccagccaggtggaattggagacacttcaccaagctat 360
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 aaaggcagacaagaacacttactccagccaggtggaattggagacacttcaccaagctat 293

                                                                       
Query: 361 cctctggcttggtcccttaagtcactccatggaccatctgctctattccccactctgagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 cctctggcttggtcccttaagtcactccatggaccatctgctctattccccactctgagt 233

                                                                       
Query: 421 ccatcttaatagcttatattaatacacagaatcctctctccctctcttcctctcttcctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 ccatcttaatagcttatattaatacacagaatcctctctccctctcttcctctcttcctc 173

                             
Query: 481 tctccctcatccctctgt 498
           ||||||||||||||||||
Sbjct: 172 tctccctcatccctctgt 155


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no353_k11.g1 MSMg01no353_k11.g1 CHROMAT_FILE:
MSMg01no353_k11.g1 PHD_FILE: MSMg01no353_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:35 2005
         (425 letters)



>mm_chr9_120117608_120118432
          Length = 825

 Score =  806 bits (417), Expect = 0.0
 Identities = 423/425 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtcctcaatagtgtgtgttcttaacctctgagcgtctgcgcagccacaatttcagagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtcctcaatagtgtgtgttcttaacctctgagcgtctgcgcagccacaatttcagagtt 260

                                                                       
Query: 61  ttttggcccatgagtccaggctggctctgggcctgcgttgaggaagagtaatgtgtgagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttggcccatgagtccaggctggctctgggcctgcgttgaggaagagtaatgtgtgagt 320

                                                                       
Query: 121 atccagggtggagcacaggccctcacctgaaggcagcctggaggcagagacagagtgaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atccagggtggagcacaggccctcacctgaaggcagcctggaggcagagacagagtgaca 380

                                                                       
Query: 181 gggacacagagacagtgagagagacagaggggatggggtggactgagggcctgccactga 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 gggacacagagacagtgagagagacagaggggatggggcggactgagggcctgccactga 440

                                                                       
Query: 241 gcctggctgatgccccctacggtggtgcctcgggcagcgggccaagcaagtggcttttgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 gcctggctgatgccccctacggtggtgcctcgggcagcgggccaagcgagtggcttttgt 500

                                                                       
Query: 301 gtcatttaaagcccagcactgacctgatgagcctcatctacgttggaggcaacacatttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcatttaaagcccagcactgacctgatgagcctcatctacgttggaggcaacacatttt 560

                                                                       
Query: 361 gctccttgcttcaggaatgctaaccttgggctgtggagacggcacagagcttaagtgcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctccttgcttcaggaatgctaaccttgggctgtggagacggcacagagcttaagtgcct 620

                
Query: 421 ccctc 425
           |||||
Sbjct: 621 ccctc 625


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space:   339456
Effective search space used:   339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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