BAC Information

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BAC

Clone NameMSMg01-353L15
Chromosome9 (Build37)
Map Location 115,389,481 - 115,588,126
singlet/doubletdoublet
Overlap genenone
Upstream geneCcr4, Trim71, LOC100043808, Cnot10, LOC665772, Dync1li1, Cmtm6, Cmtm7, Cmtm8, Gpd1l, LOC100043813, Osbpl10, LOC100043812, Stt3b, LOC100039567, LOC670467, EG546164
Downstream geneGadl1, EG668829, Tgfbr2, LOC100043817, LOC100043819, D730003K21Rik, Rbms3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353L15.T7 (MSMg01no353_l15.b1)MSMg01-353L15.TJ (MSMg01no353_l15.g1)
ACCAG464535AG464536
length758780
length of high quality
(start - end)		455 (73 - 527)432 (84 - 515)
definitionCHROMAT_FILE: MSMg01no353_l15.b1 PHD_FILE: MSMg01no353_l15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:41 2005CHROMAT_FILE: MSMg01no353_l15.g1 PHD_FILE: MSMg01no353_l15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,587,672 - 115,588,126)(115,389,481 - 115,389,911)
sequence
TAATTTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCAGTCGTTCACTTGAGATTTTCATAGCTATTACCCCAT
AATCTCTTCATGCTGACTGTCACCTAGAAAAATCTGTAGCCAGCTGCCTT
GCCCCTATCAATGACTTTCCAGTGGATTATTTTTGAAATCCAGAAAATTT
ATTGGAGTATGTCTTTGAGATTCCTGTAAGAAAGCTTTTTTTCCCTTTCA
GGATCTGGTGGTAGCTCATATCTAAATATTGAGATAATGTTGGTTATGCT
GTTTTATATCATTTCTCAGGCTTTCAAGTCTTCAGGGACATGCCATATCT
TGGTTTACATTCTGTGTTTCCCCTCACTCTTTGGTACTAGTATGTTATGG
TTTGTGTATGTTCAGCCCAGGGAGTAGCACTATTAGAAAGTATGGCCCTG
TTGGAGGAGGTGTGGCCTTGTTGGAGTAGGCGTGTCACTGTGGGTGTGGG
CTTTAAGACCTTCTTTCTAGCTGCCTGGGAAGCAGTATTCTGCTAGCAGC
CTTCAGATGAAGATGGAGAATTCTCCGCTCCTCCTGCACATGCCTGGCTA
GAAGCTGGCATGGTCCTGCCTTGATGATAATGGACTGAACCTCTGAACCA
TAAAGCCGCCCCCATTAAAAGGGATCCTTTTAAAAAATAGCTTTGTGCAA
AAGGTCGGGCCCCCGATAAACACCCCACATAAAAAAAAACTTGGATGGTT
CCCTCTGG

NTAATAATCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATAAGCAGAGGCTACA
ATTGGGGTACACGGGACCACTGAAGGGAAGGTCTAGTCTTCTGGAAGTGC
TTTGAGCTGCTGAGGGAGGCAGGACTGAGAGGGCTGCAGAGCAAGGCTGT
CCAGGTTAGCACAGCTCTGGCTGGCCACAGATGATCTCACTGAGTGACCT
CACCTTGAGGCTAGGTACTGGGCTCTTCAAGGTTTTAGATCTATTTCATC
CTTTATTGTTGATATTCTCCTCTTTGATTGCATACACGTCTAAATATTTC
TTTGGGCAAGTAAGTCTTCAGCCAAGTCGTACTACTTCCTGGCAAGATTG
CCATGAGCTTCAGCATTTAGAACCCGAGGAACCGTTGGCTTTGGTCATCT
TGGTAGAATTAAGAAGTACCCAGGGCGTGAATGGCGCCCCTTTGAGTTGA
GTGTGCCTGCTCGGNTGTTTCCAGAGAGGAGTGACTGAAGGGAGAATACA
GACTGAATGTGGACAGCACCATCCGTGGCGGTTGTGGGTTCTAAACTAAC
GGAAAAGGAAAAAAGACTTTTGAGGACCAAAAGTCTTCCTTTGTCCTCCC
CTAATCCCGGGGGTATTATTCCTTCAACACCTAGGTCTCACTTCTAATCC
CCTCGTTCGGGCGTGAATCCCTCTTTCCTTATTTTCCCCCCTGCGCCAAA
TCCTTTATTTGTGTATACCCGCGCTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_l15.b1 MSMg01no353_l15.b1 CHROMAT_FILE:
MSMg01no353_l15.b1 PHD_FILE: MSMg01no353_l15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:41 2005
         (455 letters)



>mm_chr9_115587607_115588461
          Length = 855

 Score =  849 bits (439), Expect = 0.0
 Identities = 451/455 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgagattttcatagctattaccccataatctcttcatgctgactgtcacctagaaaaa 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 520 cttgagattttcatagctattatcccataatctcttcatgctgactgtcacctagaaaaa 461

                                                                       
Query: 61  tctgtagccagctgccttgcccctatcaatgactttccagtggattatttttgaaatcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tctgtagccagctgccttgcccctatcaatgactttccagtggattatttttgaaatcca 401

                                                                       
Query: 121 gaaaatttattggagtatgtctttgagattcctgtaagaaagctttttttccctttcagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gaaaatttattggagtatgtctttgagattcctgtaagaaagctttttttccctttcagg 341

                                                                       
Query: 181 atctggtggtagctcatatctaaatattgagataatgttggttatgctgttttatatcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 atctggtggtagctcatatctaaatattgagataatgttggttatgctgttttatatcat 281

                                                                       
Query: 241 ttctcaggctttcaagtcttcagggacatgccatatcttggtttacattctgtgtttccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ttctcaggctttcaagtcttcagggacatgccatatcttggtttacattctgtgtttccc 221

                                                                       
Query: 301 ctcactctttggtactagtatgttatggtttgtgtatgttcagcccagggagtagcacta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 ctcactctttggtactagtatgttatggtttgtgtatgttcagcccagggagtagcacta 161

                                                                       
Query: 361 ttagaaagtatggccctgttggaggaggtgtggccttgttggagtaggcgtgtcactgtg 420
           |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 160 ttagaaagtatggccctgttggagtatgtgtggccttgttggagtaggcgtgtcactgtg 101

                                              
Query: 421 ggtgtgggctttaagaccttctttctagctgcctg 455
           ||| |||||||||||||||||||||||||||||||
Sbjct: 100 ggtatgggctttaagaccttctttctagctgcctg 66


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space:   376025
Effective search space used:   376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no353_l15.g1 MSMg01no353_l15.g1 CHROMAT_FILE:
MSMg01no353_l15.g1 PHD_FILE: MSMg01no353_l15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:41 2005
         (432 letters)



>mm_chr9_115389281_115390112
          Length = 832

 Score =  833 bits (431), Expect = 0.0
 Identities = 431/431 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cataagcagaggctacaattggggtacacgggaccactgaagggaaggtctagtcttctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cataagcagaggctacaattggggtacacgggaccactgaagggaaggtctagtcttctg 260

                                                                       
Query: 61  gaagtgctttgagctgctgagggaggcaggactgagagggctgcagagcaaggctgtcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagtgctttgagctgctgagggaggcaggactgagagggctgcagagcaaggctgtcca 320

                                                                       
Query: 121 ggttagcacagctctggctggccacagatgatctcactgagtgacctcaccttgaggcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggttagcacagctctggctggccacagatgatctcactgagtgacctcaccttgaggcta 380

                                                                       
Query: 181 ggtactgggctcttcaaggttttagatctatttcatcctttattgttgatattctcctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtactgggctcttcaaggttttagatctatttcatcctttattgttgatattctcctct 440

                                                                       
Query: 241 ttgattgcatacacgtctaaatatttctttgggcaagtaagtcttcagccaagtcgtact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgattgcatacacgtctaaatatttctttgggcaagtaagtcttcagccaagtcgtact 500

                                                                       
Query: 301 acttcctggcaagattgccatgagcttcagcatttagaacccgaggaaccgttggctttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acttcctggcaagattgccatgagcttcagcatttagaacccgaggaaccgttggctttg 560

                                                                       
Query: 361 gtcatcttggtagaattaagaagtacccagggcgtgaatggcgcccctttgagttgagtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtcatcttggtagaattaagaagtacccagggcgtgaatggcgcccctttgagttgagtg 620

                      
Query: 421 tgcctgctcgg 431
           |||||||||||
Sbjct: 621 tgcctgctcgg 631


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space:   348129
Effective search space used:   348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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