BAC Information

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BAC

Clone NameMSMg01-353M03
Chromosome9 (Build37)
Map Location 110,492,703 - 110,493,190
singlet/doubletsinglet
Overlap geneSetd2
Upstream geneEG382106, E330001B16Rik, C85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, Mtap4, LOC100049540, Dhx30, Smarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9
Downstream geneNradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2, Mlh1, Epm2aip1, Lba1, Dclk3, LOC620615, Stac
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353M03.T7 (MSMg01no353_m03.b1)MSMg01-353M03.TJ (MSMg01no353_m03.g1)
ACCAG464558AG464559
length745754
length of high quality
(start - end)
488 (90 - 577)60 (193 - 252)
definitionCHROMAT_FILE: MSMg01no353_m03.b1 PHD_FILE: MSMg01no353_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:43 2005CHROMAT_FILE: MSMg01no353_m03.g1 PHD_FILE: MSMg01no353_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCAGGATTCCCATTCATTTTGCTCGGGTCAGATCCTATTT
TATTTAGAGCCGAACGTATTAAGTTTCAGAGAATACTTACTTACGAATCA
ATCTATTTTCCTTGTAGTGTGTTTTCCTGGCCTTCCTGTATCTTTATGAT
ATCAGTTTCAGACCTATGATCTTATCACCTCTACACTGCTAACTCATTTT
TGTGTGTGTGTTTTTTGGTGTTTTGCAGGAGGTGTATCGGATTCCAAAGA
AAAGTCAAACTGAAAAGGAGAGCACATGTATTTTGAAAAACGCTTGCGTA
GCTTGGTAACTTTTTAAGAATTCTTTACAGAATTGTGGAGACAACCTGTA
AGGACTTGAGTGTTCTTCCTTTTGAAATAAGCATGCATAGAAAAATGAAA
CATTGGATGTAATAATTTGGAAACTTGAACCTGTATTCTTTCCTAGTGGG
TTTTTCCAAAGGAGATATTTCTTAACTGCCTATGTTGTCGCTTTGGTAAC
TTACCTTTCATTGAACTGTCCCTCTAGAATAGAGAGTCTTTGTTTGGTAG
CTTGTTTTCTTGCTCCTTCAGCGGTGGGGGTTGAACCTGGTCCTCTCACA
TGTTAGGCAAGTACTCCACCTCTCAGTTTCTCGTCCTGGCCTTAATTTAG
GTTTCCTTTTATGATAAGTCCTTTACGGTTGCATTTTCCTGTTCT
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAGAAATTCTCTTCCCTTGGAAGACTAAGTCAG
GTATGATGACTCATGTCTGTAATCCCAGCCCTAGGAGGCTGAGACAGGAG
GATCACCACAAGTTTGAGGACAGTCAGGGGTGCCTAATGAGTCTTGACTT
TTTTTAACTATGTATTTTTACTTTTATGAGCATTGGTGTTTTACCTTCAT
GTATGTCTGTATGAGCGTGTCGGATCTTGGATTTACATAAAGATGTGAGC
CGCCATGTGAGGCCGCTGGGAATTGTTTTTAGTATCTCCAGAAGGGCGTG
CAGTGCTCTTAGCAGGATGAGCCATCTCTCCAACCCCCAGTCTTGATTTG
AACAAAAGTAGAGATAAGACTGACGTACTCAGTTGAATACCTCTTGCCTC
CGAAGAGGGCGGCCCTGGTTGTGCGTCCTCGAGGCTGCAGCGTGCCTCCA
GGTGTGTACTGGCAAAGTCGGACCTCCATACACGTGTGAGCTGCTCCCAG
CTCGTCCTACTGGTCGAGACTTCTGCCCTGTAGGAGTATGTCGAATAAGT
GATTGAGATTCCGTCCCCATTTTGAGAGAGTCTATACTCCCAACATTAAC
TGTGCCCAGCGCTTACCCTGTTTTTATCGTGGGCTTTTGTTCCGTGCGCC
CCACCCCTTACCCTCCCCGGTTTTGTTTCCGACCGTTTTCTTCGCTTGGT
CCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_m03.b1 MSMg01no353_m03.b1 CHROMAT_FILE:
MSMg01no353_m03.b1 PHD_FILE: MSMg01no353_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:43 2005
         (488 letters)



>mm_chr9_110492503_110493390
          Length = 888

 Score =  866 bits (448), Expect = 0.0
 Identities = 478/488 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatcctattttatttagagccgaacgtattaagtttcagagaatacttacttacgaatc 60
           ||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 201 agatcctattttatttaaagccaaacgtattaagtttcagagaatacttacttaccaatc 260

                                                                       
Query: 61  aatctattttccttgtagtgtgttttcctggccttcctgtatctttatgatatcagtttc 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 261 aatctattttccttgtagtgtgttttcctggccttcctgtagctttatgttatcagtttc 320

                                                                       
Query: 121 agacctatgatcttatcacctctacactgctaactcatttttgtgtgtgtgttttttggt 180
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 321 agacctatgatcttatcacctctacactgctaactcatttttttgtgtgtgttttttgtt 380

                                                                       
Query: 181 gttttgcaggaggtgtatcggattccaaagaaaagtcaaactgaaaaggagagcacatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 gttttgcaggaggtgtatcggattccaaagaaaagtcaaactgaaaaggagagcacaggt 440

                                                                       
Query: 241 attttgaaaaacgcttgcgtagcttggtaactttttaagaattctttacagaattgtgga 300
           |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggttgaaaaacgcttgcgtagcttggtaactttttaagaattctttacagaattgtgga 500

                                                                       
Query: 301 gacaacctgtaaggacttgagtgttcttccttttgaaataagcatgcatagaaaaatgaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacaacctgtaaggacttgagtgttcttccttttgaaataagcatgcatagaaaaatgaa 560

                                                                       
Query: 361 acattggatgtaataatttggaaacttgaacctgtattctttcctagtgggtttttccaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acattggatgtaataatttggaaacttgaacctgtattctttcctagtgggtttttccaa 620

                                                                       
Query: 421 aggagatatttcttaactgcctatgttgtcgctttggtaacttacctttcattgaactgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggagatatttcttaactgcctatgttgtcgctttggtaacttacctttcattgaactgt 680

                   
Query: 481 ccctctag 488
           ||||||||
Sbjct: 681 ccctctag 688


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)