BAC Information

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BAC

Clone NameMSMg01-354D19
Chromosome9 (Build37)
Map Location 36,921,241 - 36,921,780
singlet/doubletsinglet
Overlap genePknox2
Upstream geneEG546123, LOC100041618, LOC100042485, EG639025, LOC671003, EG434396, A630095E13Rik, Acrv1, Chek1, Stt3a, Ei24, LOC627681, Fez1, LOC100042545
Downstream gene1810021J13Rik, Slc37a2, LOC100042561, Ccdc15, Hepacam, Robo4, Robo3, BC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875, Olfr876, Olfr877, Olfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354D19.T7 (MSMg01no354_d19.b1)MSMg01-354D19.TJ (MSMg01no354_d19.g1)
ACCAG464916AG464917
length777758
length of high quality
(start - end)
424 (65 - 488)540 (75 - 614)
definitionCHROMAT_FILE: MSMg01no354_d19.b1 PHD_FILE: MSMg01no354_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:20 2005CHROMAT_FILE: MSMg01no354_d19.g1 PHD_FILE: MSMg01no354_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAAGAATGACGGGGGAAGCCTACATACATTGTTATGGATTGTGACA
AATAAACCCAAATTACTTTATAACAGGTGCTTGTTCAAATGGTGCAGGGA
TAATCAGACATCCACAAACAAGCAAGCACAAACCCCTAAACCTTAATTTA
AACTCCCCACCTAATACAAAGATTAATTCAAATGAAGTAGAGACCTAAAT
ATGAGACAAAGAACTATAGCACTTTTAGAAAAAAAGAAAATGGAGCCAGG
CATGACAGCACACGCCTTTAATCCCACCACTCAGAGACAGAGACAGGAGA
ATTTCTGAGTTCAAGACCAGTCTGGTCTACAGAACAAGTTTCAAGATAGC
CGGGACTACACAGAGCAACCCTGTCTTGAAAAACAAAACAAGAGAGGGAG
AGAGGAAGACACACAAAGAGAGACAAAGAAGAAGGAGAAGAAGAAGAGAG
GAGGAGGGAGAAGGACGGAGGAGGAGGGAGAAGGAGGTATGATTATCTAT
TCCTCTTTCTATCCCTCCCTATTCACTCCTTTTTTTTTCTTTTCTCTTTT
TCTCCTAACTCTATGNNCCNNNNCTTATTATTTATNTATTTTTTTTATAT
GTTTTGGTTANNNAATTATANNCTATTTATTATTACTTTTTTTTTGTATN
CNTTCCTTTCGTTCTTTCCTTTGNATGTTATATGGAGTATTATTCTTATT
TACTCTCCCTTTTATGTTTTTTTCTTG
CATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTTCTCATACTCCTGCCCCCTCCTC
ACTCTCAGCTGCCAGGTGTTTGGGGAGTTAAAAATCTCTTTTATTATGAA
GTAAAATATTTGAAGTCTGTAAATATATGGCCCTCATAATGGAATTTCAC
TGTGGTGAATTTTTCCTTCTGTGATCTTCATTTTCAGTCCTAGCTGAAAT
TCCCTGGTCTCTGGTAACCATGACTCCAGCCCCCTGAATATATTGTCCAG
AAACCCCCCTGACCTGGATAATACAGGGAGGGCCTGGGCCTTGAACCTCA
CCTCTATCCTCTAGGCTCAACTTTTTTCATGAGACCCTCAGGTCAATTGC
AGGGAAATGGGAGGACCACAGGGGTCAGGCAATGGGCAGAACTTGTAGAA
TATTCTGTCAGGACTACACAGCTAAACGTTCATCTTTCTTCCTTAAGGAA
ACACTTTCCTTCTCAGTCACTGAAAAAGGTCCATGTTTTCAAACTATAAC
CCCAGTTGTTCTTCCCTTCCCTCTAGGGGTCCTTGACAGCATGGTTAAGC
TAGGTTTATGCTTTCAATTCCAGTACTTGGAAGGCAGAGGCAGGATATCA
ATGCAAATTCAGGGGCTGCTTGGTCCATATGAGATCCAGGCCAGCTTGGG
TTACAGATAAAGTAATAGTAAATGCAGGCTGAATCTTTCTGCCCGGCATG
CCTTGGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_d19.g1 MSMg01no354_d19.g1 CHROMAT_FILE:
MSMg01no354_d19.g1 PHD_FILE: MSMg01no354_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:20 2005
         (540 letters)



>mm_chr9_36921041_36921980
          Length = 940

 Score = 1021 bits (528), Expect = 0.0
 Identities = 537/540 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttctcatactcctgccccctcctcactctcagctgccaggtgtttggggagttaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 atttctcatactcctgccccctcctcactctcagctgccaggtgtttggggagttaaaaa 681

                                                                       
Query: 61  tctcttttattatgaagtaaaatatttgaagtctgtaaatatatggccctcataatggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tctcttttattatgaagtaaaatatttgaagtctgtaaatatatggccctcataatggaa 621

                                                                       
Query: 121 tttcactgtggtgaatttttccttctgtgatcttcattttcagtcctagctgaaattccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tttcactgtggtgaatttttccttctgtgatcttcattttcagtcctagctgaaattccc 561

                                                                       
Query: 181 tggtctctggtaaccatgactccagccccctgaatatattgtccagaaacccccctgacc 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 560 tggtctctggtaaccatgactccggccccctgaatatattgtccagaaacccccctgacc 501

                                                                       
Query: 241 tggataatacagggagggcctgggccttgaacctcacctctatcctctaggctcaacttt 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tggataagacagggagggcctgggccttgaacctcacctctatcctctaggctcaacttt 441

                                                                       
Query: 301 tttcatgagaccctcaggtcaattgcagggaaatgggaggaccacaggggtcaggcaatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tttcatgagaccctcaggtcaattgcagggaaatgggaggaccacaggggtcaggcaatg 381

                                                                       
Query: 361 ggcagaacttgtagaatattctgtcaggactacacagctaaacgttcatctttcttcctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggcagaacttgtagaatattctgtcaggactacacagctaaacgttcatctttcttcctt 321

                                                                       
Query: 421 aaggaaacactttccttctcagtcactgaaaaaggtccatgttttcaaactataacccca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aaggaaacactttccttctcagtcactgaaaaaggtccatgttttcaaactataacccca 261

                                                                       
Query: 481 gttgttcttcccttccctctaggggtccttgacagcatggttaagctaggtttatgcttt 540
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gttgttctttccttccctctaggggtccttgacagcatggttaagctaggtttatgcttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)