Query= MSMg01no354_f09.b1 MSMg01no354_f09.b1 CHROMAT_FILE:
MSMg01no354_f09.b1 PHD_FILE: MSMg01no354_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:27 2005
(607 letters)
>mm_chr9_33431319_33432325
Length = 1007
Score = 1125 bits (582), Expect = 0.0
Identities = 596/603 (98%), Gaps = 4/603 (0%)
Strand = Plus / Plus
Query: 5 gaattcttaaattcattcattcattcattcattcattcatttactcaaattaatttaatc 64
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 209 gaattcttaaattcattcattcattcattcattcatt----tactcaaattaatttaatc 264
Query: 65 atcagattcttacaaagtcttttttaagagatagctgtcaaagaatgtatgaaaaatatt 124
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 265 atcagattcttacaaagtctttcttaagagatagctgtcaaagaatgtatgaaaaatatt 324
Query: 125 tatttaaaactctacagatattaaagaaaacaggttagtgaaagacagacagataaattg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatttaaaactctacagatattaaagaaaacaggttagtgaaagacagacagataaattg 384
Query: 185 tagtaaatgaggtatgggatgcagaaggtatgtgtaaggattaaagtcaggctctaatat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagtaaatgaggtatgggatgcagaaggtatgtgtaaggattaaagtcaggctctaatat 444
Query: 245 gattggaaaggtagggcgaattgcagtcaacagagctaacatttgagcagtgttctgagt 304
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gactggaaaggtagggcgaattgcagtcaacagagctaacatttgagcagtgttctgagt 504
Query: 305 gacaaatagaaattgtcaccatggagaaaaatggctaagagttttaggtagagaggatgg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gacaaatagaaattgtcaccatggagaaaaatggctaagagttttaggtagagaggatgg 564
Query: 365 aatgtgacggagactgatatggcaagaatatgatgtgacagtgacacagtatttctggat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aatgtgacggagactgatatggcaagaatatgatgtgacagtgacacagtatttctggat 624
Query: 425 ggctataggagagtctgaaattacaggttggagctcacttagcaaacctcataaggcaaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggctataggagagtctgaaattacaggttggagctcacttagcaaacctcataaggcaaa 684
Query: 485 tagaatgtagtcagcaatgggaagctgaccaaggttgttaaactgagaagtgctgctgaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tagaatgtagtcagcaatgggaagctgaccaaggttgttaaactgagaagtgctgctgaa 744
Query: 545 aagggcaccagaatttcctactttggaagnctgtgtaaatggtaatgtccttacttatgc 604
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 745 aagggcaccagaatttcctactttggaagtctgtgtaaatggtaatgtccttacttatgc 804
Query: 605 aaa 607
|||
Sbjct: 805 aaa 807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space: 595209
Effective search space used: 595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no354_f09.g1 MSMg01no354_f09.g1 CHROMAT_FILE:
MSMg01no354_f09.g1 PHD_FILE: MSMg01no354_f09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:27 2005
(467 letters)
>mm_chr9_33576213_33577079
Length = 867
Score = 874 bits (452), Expect = 0.0
Identities = 461/464 (99%)
Strand = Plus / Minus
Query: 1 ttcccaatgtgtgagtactctgagaagctcagcatagtatctgtcacaagaatcagtgct 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 664 ttcccaatgtgtgagtactctgagaagctcagcatagcatctgtcacaagaatcagtgct 605
Query: 61 ataaatcctttcaaagagcagatatggaaagtcactattttcaagtacacatgatcttga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 ataaatcctttcaaagagcagatatggaaagtcactattttcaagtacacatgatcttga 545
Query: 121 gcaagattcctaaaggaagacaacactgttaagatgtagtttcctgagcttagccatcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gcaagattcctaaaggaagacaacactgttaagatgtagtttcctgagcttagccatcaa 485
Query: 181 gaaacaagttctaccttgcctgcaggatcaacactaagttcaggtttccaggccccagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gaaacaagttctaccttgcctgcaggatcaacactaagttcaggtttccaggccccagaa 425
Query: 241 cccaattcctaccccgcttcttcagatgttccctgtttgtctgttatccagtaaagaatg 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 cccaattcctaccctgcttcttcagatgttccctgtttgtctgttatccagtaaagaatg 365
Query: 301 caaagagacaggatgctgttatcctgttctctaaactaaggcacacaagtcataaatgtg 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 caaagagacagaatgctgttatcctgttctctaaactaaggcacacaagtcataaatgtg 305
Query: 361 ctgcttgtcttgacttaattgactacaagcagcttactcactcctttggtcccttatcac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ctgcttgtcttgacttaattgactacaagcagcttactcactcctttggtcccttatcac 245
Query: 421 tctgcattcctggtgtcctggtgactgtgtgctgcttgcccatt 464
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tctgcattcctggtgtcctggtgactgtgtgctgcttgcccatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space: 391649
Effective search space used: 391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
