NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCACCTGTAGCGCATACCGAATGGCTTAGAAGCACCTGAA
AAGATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCC
TGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGATCAAAATTTCAGGT
GACAGCAGATGCTGGCGAGCATGTGGAGAAAGAGGAACACTCCTCCATTG
TTGGAGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGTGGT
TCCTCAGAAAATTGGACATAGTACTACTGGAGGATCCCGCAATAACTCTC
CTAGGCATATATCATGAAGATGTTCCAACCGGNNNGAAGGACACATGCTC
CACTATGTTCATAGCAGCCTTGCTTATAATAGCCAGAAGCTGGATAGAAC
CCAGATACCCCTCATCNTAGGAATGGACACAATAAATGTGGTACATTTAC
ACAATGGAGTACTACCCCGCTATTATAAAGAATGAATTTACGAAATTCCT
GTGCAAATGGCTGCACCTGCAGTGTATCATCCTGATAGAAGTAACCTAAT
TCACTGNNNAATTCTTTATGATTTGTNTTTTTTGTATATGTGTATATTAG
NNCCATAATCNTATTTTATTTTGCTGTTTTTTCACATTNAGTCCCACTTC
TGCCGCTTTCNCTNGTATTGNACAACATTATTTGTGGATCCCTTCTGTTT
CTTTTTTATCC

NTCTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAGTTCACATTTAAATC
TAGAGCAATGGTGAATAAAATAAAGGAGGAATTCAGGGTCTGCAGGAGAA
AGTCAACAACATAGATGAGAAGGGAAGCACAGAAGATGAACCAGAATGTG
AACACTTCAGAAAGAAGATGAGATTTGAGGGAAAAATGACAGAGTTGGGT
GTGAAGAAAATGTATTTGGAAATGAAAAATCTAATCAATCAAATCAAAAA
TGCAGAGTAAAGCATCATCATTAAAGTAGACAGCAACAGAAAGAATATTA
AATATAGTAGACAGGATCAATTTTCTAGAACATTCAAGTCCAAAATCATC
AAGATAAAGAACAATAAAACCTGTCGGGCATGGTGGTGCACGCCTTTAAT
CCCAGCATTTGGGAGGCAGAGGCAGGCAGTTTTCTGAGTTCAAGGTCAGC
CTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGACTACACAGAGAAACCC
TGTCTCAAAACAAAACAACACAAGACAAAAACGAACAAACAAAAGAACAA
TAAAACCTAGACTAAGCAAGCAAAATGACTCAGTGGCTAAATGTTCTTGA
TACTCAGCCTGATGATAAGAGTTTGATCCCTGAAACTCATATGATAGAAG
AAAATAAACAACTCCCTTCAGTTGTCCTGTGATTTCCACTGGTGTGGTGT
GTGTGTGG

Query= MSMg01no354_n03.g1 MSMg01no354_n03.g1 CHROMAT_FILE:
MSMg01no354_n03.g1 PHD_FILE: MSMg01no354_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:05 2005
         (584 letters)



>mm_chr9_93704522_93705505
          Length = 984

 Score = 1007 bits (521), Expect = 0.0
 Identities = 536/541 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaagttcacatttaaatctagagcaatggtgaataaaataaaggaggaattcagggtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aaaagttcacatttaaatctagagcaatggtgaataaaataaaggaggaattcagggtct 482

                                                                       
Query: 61  gcaggagaaagtcaacaacatagatgagaagggaagcacagaagatgaaccagaatgtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gcaggagaaagtcaacaacatagatgagaagggaagcacagaagatgaaccagaatgtga 422

                                                                       
Query: 121 acacttcagaaagaagatgagatttgagggaaaaatgacagagttgggtgtgaagaaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 421 acacttcagaaagaagatgagatttgagggaaaaatgacagagttgggtgtgaagaaaac 362

                                                                       
Query: 181 gtatttggaaatgaaaaatctaatcaatcaaatcaaaaatgcagagtaaagcatcatcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gtatttggaaatgaaaaatctaatcaatcaaatcaaaaatgcagagtaaagcatcatcat 302

                                                                       
Query: 241 taaagtagacagcaacagaaagaatattaaatatagtagacaggatcaattttctagaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 taaagtagacagcaacagaaagaatattaaatatagtagacaggatcaattttctagaac 242

                                                                       
Query: 301 attcaagtccaaaatcatcaagataaagaacaataaaacctgtcgggcatggtggtgcac 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 241 attcaagtccaaaatcatcaagataaagaacaataaaacctgttgggcatggtggtgcac 182

                                                                       
Query: 361 gcctttaatcccagcatttgggaggcagaggcaggcagttttctgagttcaaggtcagcc 420
           |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 181 gcctttaatcccagcacttgggaggcagaggcaggcagatttctgagttcaaggtcagcc 122

                                                                       
Query: 421 tggtctacagagtgagttccaggacagccaggactacacagagaaaccctgtctcaaaac 480
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 121 tggtctacagagtgagttccaggacagtcaggactacacagagaaaccctgtctcaaaac 62

                                                                       
Query: 481 aaaacaacacaagacaaaaacgaacaaacaaaagaacaataaaacctagactaagcaagc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aaaacaacacaagacaaaaacgaacaaacaaaagaacaataaaacctagactaagcaagc 2

            
Query: 541 a 541
           |
Sbjct: 1   a 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)