Query= MSMg01no355_a11.b1 MSMg01no355_a11.b1 CHROMAT_FILE:
MSMg01no355_a11.b1 PHD_FILE: MSMg01no355_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:22 2005
(312 letters)
>mm_chr9_77218829_77219544
Length = 716
Score = 443 bits (229), Expect = e-129
Identities = 283/303 (93%), Gaps = 8/303 (2%)
Strand = Plus / Plus
Query: 12 ggaattccgggattcactgtcttctagacgcgc--gattccgcaccggtgccacatcccc 69
|||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 212 ggaattccgggaaacactgtcttctagacgcgcgggtttccgcaccggtgccacatcccc 271
Query: 70 taagcacacagcattggtgcttaccctcccaaggctggggccaggcgtttctgtc--aga 127
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 272 taagcacacagcattggtgcttaccctcccaaaactggggccaggcgtttctgtcataga 331
Query: 128 acagggaggggctttgtgaggctccagctgcaggtagttgtggttggtggggaagggagg 187
| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 atggggaagggctttgtgaggctccagctgcaggtagttgtggttggtggggaagggagg 391
Query: 188 gtcacatcctttagtggtgtggccaggggtaagctggggagacaacccacctcttgctgt 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gtcacatcctttagtggtgtggccaggggtaagctggggagacaacccacctcttgctgt 451
Query: 248 gcagacaggcacactaaaaaaaaaaaaaaaagaatagaata-gaaaaa-agaaaaagaaa 305
|||||||||||||| ||||| |||||||||||| |||| | |||||| | |||||||||
Sbjct: 452 gcagacaggcacac--aaaaagaaaaaaaaagaaaagaaaaagaaaaagaaaaaaagaaa 509
Query: 306 aag 308
|||
Sbjct: 510 aag 512
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 716
Length adjustment: 9
Effective length of query: 303
Effective length of database: 707
Effective search space: 214221
Effective search space used: 214221
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no355_a11.g1 MSMg01no355_a11.g1 CHROMAT_FILE:
MSMg01no355_a11.g1 PHD_FILE: MSMg01no355_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:22 2005
(472 letters)
>mm_chr9_77384931_77385802
Length = 872
Score = 897 bits (464), Expect = 0.0
Identities = 470/472 (99%)
Strand = Plus / Minus
Query: 1 ctcctgtagatgagtgtcccgtggcgggtgaagaccaagtaccggtgtgtgctttggaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 ctcctgtagatgagtgtcccgtggcgggtgaagaccaagtaccggtgtgtgctttggaag 613
Query: 61 agcgtcttgccctgctttctccgcagttgagtctgatcagaggacctgacagcggacagg 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 612 agcgtcttgccctgctttctccgcagttgagcctgatcagaggacctgacagcggacagg 553
Query: 121 gcgttgcagacagctatctcttgcaggatgacacaatgctgggttaggaggaaggagtct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gcgttgcagacagctatctcttgcaggatgacacaatgctgggttaggaggaaggagtct 493
Query: 181 gagttgacactgtcctctttggagaacaaggtgacagtggcatgaaggatatctggcaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gagttgacactgtcctctttggagaacaaggtgacagtggcatgaaggatatctggcaac 433
Query: 241 acaaagcttgggtgtccgcttggtgtgacagccctgtgagtcagcctagccactctcctt 300
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 432 acaaagcttgggtgtccgcttggtgtgacagccgtgtgagtcagcctagccactctcctt 373
Query: 301 cacactttgccttcttgtgcgggcctgaatcgctgacctgaagaggaagtatgcgtggca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 cacactttgccttcttgtgcgggcctgaatcgctgacctgaagaggaagtatgcgtggca 313
Query: 361 gttgtgagcttgtcctaattgtgacactttacataagcagcttctctgcagtgagcctgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gttgtgagcttgtcctaattgtgacactttacataagcagcttctctgcagtgagcctgt 253
Query: 421 gcttcattctgatcatctttggaaacaaaggaagggcagtccctacctggtg 472
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 gcttcattctgatcatctttggaaacaaaggaagggcagtccctacctggtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space: 398244
Effective search space used: 398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
