Query= MSMg01no355_d11.b1 MSMg01no355_d11.b1 CHROMAT_FILE:
MSMg01no355_d11.b1 PHD_FILE: MSMg01no355_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:36 2005
(572 letters)
>mm_chr9_52232475_52233446
Length = 972
Score = 1038 bits (537), Expect = 0.0
Identities = 561/569 (98%), Gaps = 1/569 (0%)
Strand = Plus / Plus
Query: 5 gaattctgttatataaactaattttgactcattgtcatgatagatggttaacctaagtcc 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctgttagataaactaattttgactcattgtcatgatagatggttaacctaagtcc 263
Query: 65 tctcccagggagactggatgcctagtctgttaaaaatgaaagatgggggaactgaaa-ga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 264 tctcccagggagactggatgcctagtctgttaaaaatgaaagatgggggaactgaaaaga 323
Query: 124 tgcaatatggagcaggcaagtctgatggtgctgaagtaaaagctggggaatacactggag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgcaatatggagcaggcaagtctgatggtgctgaagtaaaagctggggaatacactggag 383
Query: 184 tgagagagctttgcatgctgtcggcctgagtcagcaggggacagcttgtgactacctgta 243
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 384 tgagagagctttgcatgctgtcggcctgtgtcagcaggggacagcttgtgactacctgta 443
Query: 244 agagagaaagtagcttgctgtccttctaggcctcagttctgggaagacatttcctttcat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agagagaaagtagcttgctgtccttctaggcctcagttctgggaagacatttcctttcat 503
Query: 304 tggaggtttacttccaacaaccaatcctcttggagtccatatgtcgctcacatgagccaa 363
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 504 tggaggtttacttccaacaaccaatcctcttggagtccatatgtcactcacatgagccaa 563
Query: 364 ttagaactttccagaattattattattattattactattataattattattattttaatt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttagaactttccagaattattattattattattactattataattattattattttaatt 623
Query: 424 atgggtaaggcaggaggggtaacattccctccagtagtgagctgtgactacagggaccct 483
|||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 624 atgggtaaggtaggaggggtaacattccctccagtagtgagctgcgattacagggaccct 683
Query: 484 cagccagcctacactgggaaggaggctgctttcaaagactagagctgcagagacaacctt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 684 cagccagcctacactgggaaggaggctgctttcaaagactagagctgcagagacagcctt 743
Query: 544 atgctggtagcattggagtgtctggttct 572
|||||||||||||||||||||||||||||
Sbjct: 744 atgctggtagcattggagtgtctggttct 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space: 540644
Effective search space used: 540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no355_d11.g1 MSMg01no355_d11.g1 CHROMAT_FILE:
MSMg01no355_d11.g1 PHD_FILE: MSMg01no355_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:36 2005
(422 letters)
>mm_chr9_52387144_52387965
Length = 822
Score = 748 bits (387), Expect = 0.0
Identities = 393/395 (99%)
Strand = Plus / Minus
Query: 1 tcatatttcttatctcatcagctagcaacactgttagataatttgaaaaggtctgatggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tcatatttcttatctcatcagctagcaacactgttagataatttgaaaaggtctgatggc 336
Query: 61 tcacaatcaatggatgtgcaatctcaggttcatggatgttttataaatagcccaaattca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tcacaatcaatggatgtgcaatctcaggttcatggatgttttataaatagcccaaattca 276
Query: 121 aacaccaaattcctaagtcttggaagtgtggcttcaaaccatggtccatgacatcaagtt 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 275 aacacctaattcctaagtcttggaagtgtggcttcaaaccatggtccatgacatcaaatt 216
Query: 181 cagagtctctttttagagtctggggagacttcttcctgtgttaagtgcatgctgggctag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 cagagtctctttttagagtctggggagacttcttcctgtgttaagtgcatgctgggctag 156
Query: 241 catgaagacatacatttatatcactggtacccacataaaaagcatgctgtggtgacatgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 catgaagacatacatttatatcactggtacccacataaaaagcatgctgtggtgacatgt 96
Query: 301 gctgtaactgcagcagtggagagttggaggctgagacaaggtgatcccggagtgtgttgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 gctgtaactgcagcagtggagagttggaggctgagacaaggtgatcccggagtgtgttgg 36
Query: 361 ccagtcagtctagccaatccatgagtacctggctc 395
|||||||||||||||||||||||||||||||||||
Sbjct: 35 ccagtcagtctagccaatccatgagtacctggctc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space: 335769
Effective search space used: 335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
