BAC Information

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BAC

Clone NameMSMg01-355E19
Chromosome9 (Build37)
Map Location 38,323,297 - 38,323,848
singlet/doubletsinglet
Overlap geneOlfr908
Upstream geneBC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875, Olfr876, Olfr877, Olfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900, Olfr147, Olfr901, Olfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907
Downstream geneOlfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355E19.T7 (MSMg01no355_e19.b1)MSMg01-355E19.TJ (MSMg01no355_e19.g1)
ACCAG465720AG465721
length742755
length of high quality
(start - end)		555 (49 - 603)463 (81 - 543)
definitionCHROMAT_FILE: MSMg01no355_e19.b1 PHD_FILE: MSMg01no355_e19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:42 2005CHROMAT_FILE: MSMg01no355_e19.g1 PHD_FILE: MSMg01no355_e19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:43 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNAAATTAGTCCTCATGTCACTXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCTGCTTGTCCTGTCTTCTTCTATTTGATATCTGAGCACTTA
TGCCAGCAAGTGAAAGCAACAGTCATAGCTTTTTAGATTGTTGGTGAATT
ATTTTACTCTATTTGTTAAGCCTTTAATGCAGTAATATGGGAAAATATTT
CTCTTTGTCATGATAGTATGAATGGCAAATTCTGTGAGTTCAGTTGGTAA
CTGTAATGCCTTTACAGATTCTACTTCTCTAACATGAGAGAAACTATGCT
AGTAATTTCATGTGCCCTTATAATTGTCACAGTTATTTTTCTATTGTTGA
TTCACAGATTATTTTAACGAAGAATGGGTGTGGAGAATGGTTCATTGGTG
ACCGAATTCATTCTGCAGGGATTGACAAGTGATCCTGATCTCCAGTTACC
CCTATTCTTACTCTTTCTGCTAATATACACAACAACAGTACTGGGGAATT
TGTCCTTGATCACTTTAATTGCACTGAATTCTCACCTTCACACCCCCATG
TACTTTTTCCTTTTAAACTTGTCTTTCATTGACCTTTGTTATTCATCTGT
AATTACACCCAAAATCCTGATGAACTTCTTAGGAAGGAAGAACTTTATCT
CCTATGTATGATGTATGACCCAGCTCTATTTCTTTGTTTTTTTTGCTGCT
AGCGGAAGTTGTGTTCTGTCATCCATGGTCATAGACCGTTAN

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCTCTCTCTTCGGTTGTT
ACGAGCATCTGCAACCGCTGTTGACAGTCATCCCAAGTAGGCTGATGAGA
GAACATAAGGAACTCCACCAACCCTGTGAGGCGTTGGGGATCCTGAGAAA
GGGGGTAGTTAATTTTCCAGTTATAAATACCAGCAGAGGAAAATGACCAG
TACTAAAGGGTTTAAAGTTTGGGCGTGTCCACCAGAGTCCGCCCAGACTC
TGTGCTCTGCGGCTCCATGTACCTGAGCAGTCCTCCTCTTGCCACCCTGA
GGGGTTCAGGCTTCCCCATCGGCGGGGGTCGAGGCTGTGGATAAGGGGAA
GGTTGTGGACTAGGCCACTCAGGAGGCTTTATAGATTTTGGAGGAGCCGA
TTTAGCTGGTGGCTCCGGTTTGGGAGAAGCCTTCAATTTCTCTTGTAACA
TGAGAGTACAACCACAATTTTGAGAAGCAAAACCCAATTTTAACAGTGAA
AACAATCTATTTTCTTTAAAAATGAACTCCAAAAACATTACTTGCTTACA
AGTTTGGCTGTCCGTTCCTGCACACAAACACCAGAAGGTGTAGCCGCCCA
TATATCTGTTTTAAATCCGGTTTCCTGGATTATAATTACTCTTGATATTT
TCCCTCTTCGGGGGATCTTTTAAGACCTGTTTTCTGGGGGTTGGTCTAGT
CCCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_e19.b1 MSMg01no355_e19.b1 CHROMAT_FILE:
MSMg01no355_e19.b1 PHD_FILE: MSMg01no355_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:42 2005
         (555 letters)



>mm_chr9_38323094_38324048
          Length = 955

 Score = 1044 bits (540), Expect = 0.0
 Identities = 549/552 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctgcttgtcctgtcttcttctatttgatatctgagcacttatgccagcaagt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctgcttgtcctgtcttcttctatttgatatctgagcacttatgccagcaagt 263

                                                                       
Query: 64  gaaagcaacagtcatagctttttagattgttggtgaattattttactctatttgttaagc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 264 gaaagcaacagtcatagctttttagattgttggtgaattattttactctatttattaagc 323

                                                                       
Query: 124 ctttaatgcagtaatatgggaaaatatttctctttgtcatgatagtatgaatggcaaatt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctttaatgcagtaatatgggaaaatatttctctttgtcatgatagtatgaatggcaaatt 383

                                                                       
Query: 184 ctgtgagttcagttggtaactgtaatgcctttacagattctacttctctaacatgagaga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctgtgagttcagttggtaactgtaatgcctttacagattctacttctctaacatgagaga 443

                                                                       
Query: 244 aactatgctagtaatttcatgtgcccttataattgtcacagttatttttctattgttgat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aactatgctagtaatttcatgtgcccttataattgtcacagttatttttctattgttgat 503

                                                                       
Query: 304 tcacagattattttaacgaagaatgggtgtggagaatggttcattggtgaccgaattcat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcacagattattttaacgaagaatgggtgtggagaatggttcattggtgaccgaattcat 563

                                                                       
Query: 364 tctgcagggattgacaagtgatcctgatctccagttacccctattcttactctttctgct 423
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 564 tctgcagggattgacaagtgatcctgatctccagttacccctgttcttactctttctgct 623

                                                                       
Query: 424 aatatacacaacaacagtactggggaatttgtccttgatcactttaattgcactgaattc 483
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aatatacacaacaacagcactggggaatttgtccttgatcactttaattgcactgaattc 683

                                                                       
Query: 484 tcaccttcacacccccatgtactttttccttttaaacttgtctttcattgacctttgtta 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tcaccttcacacccccatgtactttttccttttaaacttgtctttcattgacctttgtta 743

                       
Query: 544 ttcatctgtaat 555
           ||||||||||||
Sbjct: 744 ttcatctgtaat 755


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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