Query= MSMg01no355_k21.b1 MSMg01no355_k21.b1 CHROMAT_FILE:
MSMg01no355_k21.b1 PHD_FILE: MSMg01no355_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:12 2005
(653 letters)
>mm_chr9_85952671_85953723
Length = 1053
Score = 1216 bits (629), Expect = 0.0
Identities = 644/649 (99%)
Strand = Plus / Plus
Query: 5 gaattcaccaaactctcgagctgacctttaaatgatttgataaagaaaagggcagcctac 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaccaaacactcgagctgacctttaaatgatttgataaagaaaagggcagcctac 264
Query: 65 cagaggaggagaacaaagtgttctcttccatcaaaatacgtggcaggctttgagccgggt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagaggaggagaacaaagtgttctcttccatcaaaatacgtggcaggctttgagccgggt 324
Query: 125 cctgtgcctaacatgaactggacggcatttgtcagaggtgtttctgtgtttgagtgcctg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctgtgcctaacatgaactggacggcatttgtcagaggtgtttctgtgtttgagtgcctg 384
Query: 185 tcagtttgaaatcacaccatctctgctaggaagcaactagggcaaatcatcttccttctc 244
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcagtttgaaatcacaccatttctgctaggaagcaactagggcaaatcatcttccttctc 444
Query: 245 aaaagtcaccaacagagcagatttcccattgtctctacgatggaaccctaacgtttctta 304
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 445 aaaagtcaccaacagagcagatttcccattgtctctaggatggaaccctaacgtttctta 504
Query: 305 gattcccttaacatgggcctctcttccttcataatttacagctttatttatcagcttttt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gattcccttaacatgggcctctcttccttcataatttacagctttatttatcagcttttt 564
Query: 365 ccagttataagagtcatatgttattatagacagtttataagatactgtgcataaatatta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccagttataagagtcatatgttattatagacagtttataagatactgtgcataaatatta 624
Query: 425 aaataaagattatcaccaagatataagtaccgtcagtcatatcttatttacctcttgaga 484
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 625 aaataaagattatcaccaagatataagtaccgtcagtcataccttatttacctcttgaga 684
Query: 485 acaggtctttcctatacagacatgccgaccccccttcctctctcctatcatctttcctgc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acaggtctttcctatacagacatgccgaccccccttcctctctcctatcatctttcctgc 744
Query: 545 attaagcctgtgctctgaacccatttcacatcttctctgtcactgcttagaaatacacta 604
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 745 attaagcctgtgctctgaacccatttcacatcttctctgccactgcttagaaatacacta 804
Query: 605 aaacagaacaatcacaaaatcattttcatccccaagctattgagcagag 653
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aaacagaacaatcacaaaatcattttcatccccaagctattgagcagag 853
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no355_k21.g1 MSMg01no355_k21.g1 CHROMAT_FILE:
MSMg01no355_k21.g1 PHD_FILE: MSMg01no355_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:12 2005
(473 letters)
>mm_chr9_86158981_86159852
Length = 872
Score = 837 bits (433), Expect = 0.0
Identities = 463/473 (97%), Gaps = 1/473 (0%)
Strand = Plus / Minus
Query: 1 atatctaatccactacaagaaaacaaatttttttcccagtagaaggattaagattgcttt 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 672 atatctaatccactacaagaaaac-aatttttttcccagtagaaggattaagattgcttt 614
Query: 61 gttttatagttttcctagtttcaataaaaagcaaatcactcaaagaaaaatggcatgccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 613 gttttatagttttcctagtttcaataaaaagcaaatcactcaaagaaaaatggtatgccg 554
Query: 121 accaagtcttatgctaagccttagaaatgaattctgtaatgagttggtagaatgaaatag 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 553 accaagtcttatgctaagccttagaaatgaattctgtaatgagttggtagaatggaatag 494
Query: 181 taattttccaaagaataatgctttgatgcagatgtctcttctgggcaaatagaggaatag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 taattttccaaagaataatgctttgatgcagatgtctcttctgggcaaatagaggaatag 434
Query: 241 ctcagatgagtattattcttgtttgagaaggagctttacaaaagagggcctttgaatgtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 433 ctcagatgagtattattcttgtttgagaaggagctttacaaaagagggcctttgagtgtg 374
Query: 301 aagttcagatggggataggagcatacttgagctctttctgttaggaaaacatgcagtgta 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 373 aagttcagatggggataggagcatacctgagctctttctgttaggaaaacatgcagtgta 314
Query: 361 ttttgatcatagtcccccacttgccaactccttccgtgtccacacgacctccttgcacac 420
||||||||||||||||||| ||||| ||||||||| | ||||||||||||||||||||||
Sbjct: 313 ttttgatcatagtcccccatttgcccactccttccatatccacacgacctccttgcacac 254
Query: 421 ccaactttgtcctcatacaggcctgtgaagtcgatgggatcacgggtttctag 473
|||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 253 ccaactttgtcctcatacaggcctgtgaagtcgatgggatcatgggtttctag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 872
Length adjustment: 10
Effective length of query: 463
Effective length of database: 862
Effective search space: 399106
Effective search space used: 399106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
