BAC Information

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BAC

Clone NameMSMg01-355M07
Chromosome9 (Build37)
Map Location 13,301,366 - 13,405,685
singlet/doubletdoublet
Overlap geneLOC100039758
Upstream geneLOC100039680, LOC665285, LOC100039729
Downstream geneMaml2, Mtmr2, Cep57, 2810485I05Rik, LOC665329, Sesn3, Endod1, LOC665351, EG547035, Jmjd2d, 0610040D20Rik, Amotl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355M07.T7 (MSMg01no355_m07.b1)MSMg01-355M07.TJ (MSMg01no355_m07.g1)
ACCAG466077AG466078
length864791
length of high quality
(start - end)		175 (44 - 218)492 (73 - 564)
definitionCHROMAT_FILE: MSMg01no355_m07.b1 PHD_FILE: MSMg01no355_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:18 2005CHROMAT_FILE: MSMg01no355_m07.g1 PHD_FILE: MSMg01no355_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,301,366 - 13,301,536)(13,405,217 - 13,405,685)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACCTGATGACGATGGAGGAAGGGCCTCAAAGTAGCCGATGCCAGTGG
GAGGAGCCAGGCCAAAGGTGACCAAGAAGAGGCTTTCCAGAAGCCTGTTG
TAGATTCCATCAGACCATCTCTCCTAGTAGCCTAGACAAGAAAACGAGAA
GAAGAGGAAGAGGAAGAGGAATATTTCCTTTTTTTTTCTCCNTCTCTTTT
TTTTTTTTTCTTTTGTGCTTGCTGCCCGCCCCTCCCCTCCCTTCTTCGCC
CTCCGCCCTCGTTTTTTTTTTTTTTTTTTGTTTCTGGTGGTGTTGTGTTT
GCTTCTTTTTTTTTTTCGTCGTCTGCATGTGTTGGTTGGTTTTTTTTCTT
TTTCCGTTGCCTCCTTTTTTTTGCCCCTTTTCCCTTCCTTTGTTTTTTTT
TTAGCTCTTTATCTCTATTTTTCTCTTTAGTTTTTTCTGTTTTTTGAAAT
TCCCCCCTTTCTCCATTGTATTTTCTTTACCTTCCCTCCTGTTTTTATTT
TTCGTTCGTTTCATTTTTTCTTCCTTTCTTATTTCCCCTCTTCCTCATTT
TCGTCTGTTCTCGCTTTCTTCTTTTTTCTATTCTCTCTCCTATATTTATT
CTTCTTTTACCCCTGTTTTCCCCTTTTCTCTTATTTCTCGCTGTTGTTGT
CGTTCCTCTTCTCTTTGATGTTGTCTGAATGTATCCGTCTTTTTTCTCTC
ATACTTTTCTCCCATCTCCCCCCAGCTTTTCTCTCGTTATTTCTTTTTTC
ATTTTTTTTTATGTTCCATCCGCCTCTTGTTTTTTTCTTACACCTTTTTT
TCTCTCCTTCTTTN

TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTCCACAGTCAAAGGTGGCAAGAACCG
CAAGGATGCTAAGTGCCTTGCCAACCAGCTTACACTCAGCTTTCCCAGGG
TTCATGATCACCTGCTTAGGGCTGGTGGTCCTGAATCACCTACAGACATC
CCCAGGCAATCTGACCTACACAAGTCCTCAGTTGAGGTTCTCCTCTCAGA
TGATTCTAGGGTACGGCAAGTTGACATTTAAAACTAACCAGCACAGAAGC
CATGCAGTGATGAGGCCTATTCTAACCTAACCAGAGCAGTAAAGAGGAAA
CAGGGCTCCAATGTTTCTAGATGTGGGCCTGAAGATCAGGCTTCTGCTTA
GAACTCAGTTGCAGGGTGCACTATGTGGAGTCTGCCATCTTCAGGAAGTG
GCCTTGAACTCTCAGGTCTTTGTCCCTGGAGTCTCTCTACTGCCCTGCTT
TGCTGGAAGCAGCTGGACCAAAGAGCTGAGTGTGCTACTTGTGTTCTTGT
TTTCCCCCAAATGTCAATAGGAATATTGTTTTGAAGATGATGACCGCTTA
TGAGATTTAGATGGTATCTTAGCTTTTTCCCCCCCTTCCCCTGCTTGGTA
TTACCACCTTTCTCAAATGTATTTTAGTGGGGCACATTGCCTCCCTGTTT
GTGGCATGTAATACCTATCCATTACTTTTTAACCCATTTCTTTGTACCAT
GTTGTTTACTTATTCCCCTCTTTTTATCTTGATCTTTATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_m07.b1 MSMg01no355_m07.b1 CHROMAT_FILE:
MSMg01no355_m07.b1 PHD_FILE: MSMg01no355_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:18 2005
         (175 letters)



>mm_chr9_13301162_13301736
          Length = 575

 Score =  261 bits (135), Expect = 2e-74
 Identities = 162/171 (94%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacctgatgacgatggaggaagggcctcaaagtagccgatgccagtgggaggagc 64
           |||||||||||| || || ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 205 gaattcacctgaggatgacggaggaagggcctcaaagtagccaatgccagtgggaggagc 264

                                                                       
Query: 65  caggccaaaggtgaccaagaagaggctttccagaagcctgttgtagattccatcagacca 124
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| 
Sbjct: 265 caggccaaaggtgaccaagaagaggctttccagaagcctgttgtacattccatcagaccg 324

                                                              
Query: 125 tctctcctagtagcctagacaagaaaacgagaagaagaggaagaggaagag 175
           |||||||||||||||||||  ||||||||||| ||||||||||||||||||
Sbjct: 325 tctctcctagtagcctagatgagaaaacgagaggaagaggaagaggaagag 375


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 175
Length of database: 575
Length adjustment: 8
Effective length of query: 167
Effective length of database: 567
Effective search space:    94689
Effective search space used:    94689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no355_m07.g1 MSMg01no355_m07.g1 CHROMAT_FILE:
MSMg01no355_m07.g1 PHD_FILE: MSMg01no355_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:18 2005
         (492 letters)



>mm_chr9_13404794_13405685
          Length = 892

 Score =  876 bits (453), Expect = 0.0
 Identities = 465/469 (99%)
 Strand = Plus / Minus

                                                                       
Query: 24  aaccgcaaggatgctaagtgccttgccaaccagcttacactcagctttcccagggttcat 83
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 aaccgcaaggatgctaagtgccttgccaaccagcttacactcagctttcccagggttcat 833

                                                                       
Query: 84  gatcacctgcttagggctggtggtcctgaatcacctacagacatccccaggcaatctgac 143
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 gatcacctgcttagggctggtggtcctgaatcacctacagacatccccaggcaatctgac 773

                                                                       
Query: 144 ctacacaagtcctcagttgaggttctcctctcagatgattctagggtacggcaagttgac 203
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 ctacgcaagtcctcagttgaggttctcctctcagatgattctagggtacggcaagttgac 713

                                                                       
Query: 204 atttaaaactaaccagcacagaagccatgcagtgatgaggcctattctaacctaaccaga 263
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 712 atttaaaactaaccagcacagaagccatgcagtgatgaggcctaccctaacctaaccaga 653

                                                                       
Query: 264 gcagtaaagaggaaacagggctccaatgtttctagatgtgggcctgaagatcaggcttct 323
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 gcagtaaagaggaaacagggctccaatgtttctagatgtgggcctgaagatcaggcttct 593

                                                                       
Query: 324 gcttagaactcagttgcagggtgcactatgtggagtctgccatcttcaggaagtggcctt 383
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 gcttagaactcagttgcagggtgcactatgtggagtctgccatcttcaggaagtggcctt 533

                                                                       
Query: 384 gaactctcaggtctttgtccctggagtctctctactgccctgctttgctggaagcagctg 443
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 gaactctcaggtctttgtccctggagtctctctactgccctgctttgctggaagcagctg 473

                                                            
Query: 444 gaccaaagagctgagtgtgctacttgtgttcttgttttcccccaaatgt 492
           |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 472 gaccaaagagctgagtgtgctacttgtgttcttgtttttccccaaatgt 424


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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