BAC Information

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BAC

Clone NameMSMg01-356C15
Chromosome9 (Build37)
Map Location 119,818,942 - 119,819,408
singlet/doubletsinglet
Overlap geneWdr48
Upstream geneLOC100039768, Ctdspl, Vill, Plcd1, Dlec1, Acaa1b, EG546165, Slc22a14, Slc22a13, 9330176C04Rik, Oxsr1, Myd88, Acaa1a, Xylb, Acvr2b, Endogl1, Scn5a, Scn10a, Scn11a, LOC100039837
Downstream geneGorasp1, Ttc21a, Axud1, Cmya1, Cx3cr1, Ccr8, Slc25a38, Rpsa, Snora62, EG546166, Mobp, LOC100039898, Myrip, LOC666044, Eif1b, LOC638068, Entpd3, Rpl14, 5830454E08Rik, LOC100040010
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356C15.T7 (MSMg01no356_c15.b1)MSMg01-356C15.TJ (MSMg01no356_c15.g1)
ACCAG466374AG466375
length750778
length of high quality
(start - end)		470 (34 - 503)460 (69 - 528)
definitionCHROMAT_FILE: MSMg01no356_c15.b1 PHD_FILE: MSMg01no356_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:48 2005CHROMAT_FILE: MSMg01no356_c15.g1 PHD_FILE: MSMg01no356_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCTCAG
TGATTGTCTTCACATATAGGTACCCGGGGCTGCCTGCTTTATATTGCCAT
CCACAGCCAAGAGCTGCCAGCACCTGCAGTGCTCACATGACCAAGTCTCT
TCCATGGCTGCTTCCTCTGTGTCCCTGGCAGATGCTTCCCATCTGTCCTG
ACTCCCCCAGGTCTGCTGGGAGGCAGTGTGTTTGCACTCTGATGCAACTG
GCTCTCCTCCTTCAGGAGACCTCCCATTCCTCAGTGCTGAGGCGGAGGCC
TTAACGCTGACACCTTTTTTTTTTTTTTTTTGGCTTTTCGAGACAGGGTT
TCTCTGTGTAGCCCTGCTGTCCTGGAACTTACTCTGTAGACCAGGCTGGC
CTCGAACTCAGAAATCCACCTGCCTCTGCCTCCTGAATGCTGGGATTAAA
GGCGTGTGCTTATCTGTTCACTGACACCCTAACTGCTCGTGTTCTTCCCT
GAGCAGGGCAGAAGAGCCAGGCAAACTCTGCAGCATGCCTGACAGCATCA
CTAGAATTTATCAACAGGAAGTTATCCATGCCCCAAAGAGGTACTTCAGA
TATCACAACGTGTCTACACCAAGACTCTCCCTACCCTGTTGAGGACAGAT
GGTCTTCTTGACCCCATTATCTGGTTCATAATTACTGCAGAATCTGCTGT
ACATACCCTTATTTCACAACCTCCGTTGGAAAAATCAAAAACTTCAAACC


XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAAGCCAGCCTAGGTGTCTTAGTCAGGGTTTC
TATTCCTGCACAAAACATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGG
TTTATTCAGCTTACACTTCCACATTGCTGTTCATCACCAAAGGAAGTCAG
GACTGGGACTAAACAAGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGA
GGGGTGTTTCTTATTGACTTGCTACTCCTGGCTTGCTCAGCCTGCTTTCT
TATAGAACCCAGGACCATCATTCCAGGGATGGCACCACCCACAGTGGGCC
CTCCCTGCTTGATCACAAATTGAGAAAATGCCTTACAGTTGGATCTCATG
GAGGCATTTCCTCAACTGAAGCTCCTTTCTCTGTGATAATTCCAGCTTGT
GTCAAGTTGACACATGAAACCAGCCAGTACACTGGACTACATGACTTTGT
CTCAAGAACAAAACCAAAGACAAGCTTGAGTCTTGGCGCCTGCATCTGTC
TGGGCTCCCAGCAGAATCCCCGCAGTGAATAAGACAGGTTGGGAAACTAC
TTTCTGAAAAACCTTGCGTTTACTGAAGAACATCCTCCCTCTAGGGTCCG
GATCTCCTTTCCTTGTGTATAACCATGTGAAGTAGACTTCCTTCTCTTTC
GTCTCTTTGCACACCTCTCTCCCTGTTGCCCAAATTTAAAACAACTTTTT
TCTCCTTCCCACCAATGTTCATCTTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_c15.b1 MSMg01no356_c15.b1 CHROMAT_FILE:
MSMg01no356_c15.b1 PHD_FILE: MSMg01no356_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:48 2005
         (470 letters)



>mm_chr9_119818914_119819784
          Length = 871

 Score =  861 bits (445), Expect = 0.0
 Identities = 461/467 (98%), Gaps = 3/467 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   ggaattctcagtgattgtcttc-acatataggtacccggggctgcctgctttatattgcc 65
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 495 ggaattctcagtgattgtcttcaacatataggtacccggggctgcctgctttatattgcc 436

                                                                       
Query: 66  atccacagccaagagctgccagcacctgcagtgctcacatgaccaagtctcttccatggc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 atccacagccaagagctgccagcacctgcagtgctcacatgaccaagtctcttccatggc 376

                                                                       
Query: 126 tgcttcctctgtgtccctggcagatgcttcccatctgtcctgactcccccaggtctgctg 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tgcttcctctgtgtccctggcagatgcttcccatctgtcctgactcccccaggtctgctg 316

                                                                       
Query: 186 ggaggcagtgtgtttgcactctgatgcaactggctctcctccttcaggagacctcccatt 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ggaggcagtgtgtttgcactctgatgcaactggctctcctccttcaggagacctcccatt 256

                                                                       
Query: 246 cctcagtgctgaggcggaggccttaacgctgacaccttttttttttttttttt--ggctt 303
           ||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||
Sbjct: 255 cctcagtgctgaggcggaggccttaacactgacacctttttttttttttttttttggctt 196

                                                                       
Query: 304 ttcgagacagggtttctctgtgtagccctgctgtcctggaacttactctgtagaccaggc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ttcgagacagggtttctctgtgtagccctgctgtcctggaacttactctgtagaccaggc 136

                                                                       
Query: 364 tggcctcgaactcagaaatccacctgcctctgcctcctgaatgctgggattaaaggcgtg 423
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 135 tggcctcgaactcagaaatccacctgcctctgcctcctgaatgctaggattaaaggcgtg 76

                                                          
Query: 424 tgcttatctgttcactgacaccctaactgctcgtgttcttccctgag 470
            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  cgcttatctgttcactgacaccctaactgctcgtgttcttccctgag 29


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 871
Length adjustment: 10
Effective length of query: 460
Effective length of database: 861
Effective search space:   396060
Effective search space used:   396060
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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