Query= MSMg01no356_d13.b1 MSMg01no356_d13.b1 CHROMAT_FILE:
MSMg01no356_d13.b1 PHD_FILE: MSMg01no356_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:53 2005
(580 letters)
>mm_chr9_48780673_48781652
Length = 980
Score = 909 bits (470), Expect = 0.0
Identities = 515/530 (97%), Gaps = 3/530 (0%)
Strand = Plus / Plus
Query: 50 tatctatctatctatctatctatctatctatctatctatctatctatctatctatctatc 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tatctatctatctatctatctatctatctatctatctatctatctatctatctatctatc 310
Query: 110 tatctgcttattttgtttttttgaggaaaagtctcactgtgcatccctgtgtgaccttgc 169
||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 311 tatctgcttatcttgtttttt-gaggaaaagtctcactgtgcatccctgtgtgaccttgt 369
Query: 170 acttggggtgactctcctgcctctggctcccaagtgtaagaacacactcctctttagatt 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 acttggggtgactctcctgcctctggctcccaagtgtaagaacacactcctctttagatt 429
Query: 230 atgcttggtttggattttgttgtccaagctggtcttaataatggaggatgactctgagct 289
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 atgcttgttttggtttttgttgtccaagctggtcttaataatggaggatgactctgagct 489
Query: 290 ccacatcctcctccgcacaccttctcagacagggactatggggaatccatacctagcatt 349
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 490 ccacatcctcctccgcacaccttctcagacagggattatggggaatccatacctagcatt 549
Query: 350 aaacaaatta-tagagtttattacatttacatatttatttgttgtgtatgtgtgcatgtg 408
||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 550 aaacaaattgct-gagtttattacatttacatatttatttgttgtgtatgtgtacatgtg 608
Query: 409 tttgagcatgtgtcataatgttcatgtgatggtcaagacaagcttctgggactggctctg 468
|||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 609 tttgagcacgtgtcataatgttcatgtgatggtcaggacaagctgctgggactggctctg 668
Query: 469 ttccttcaccatgtagattcaagggatcagacccaggttgccgggctccttggtaagtgc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ttccttcaccatgtagattcaagggatcagacccaggttgccgggctccttggtaagtgc 728
Query: 529 ctatagctgatgaggcatctcaccaaccctaaacttcattatatgctctg 578
|||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 729 ctatagctgatgagacatctcaccaaccctagacttcattatatgctctg 778
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 80
Number of extensions: 28
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no356_d13.g1 MSMg01no356_d13.g1 CHROMAT_FILE:
MSMg01no356_d13.g1 PHD_FILE: MSMg01no356_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:53 2005
(506 letters)
>mm_chr9_48892795_48893700
Length = 906
Score = 642 bits (332), Expect = 0.0
Identities = 338/340 (99%)
Strand = Plus / Minus
Query: 1 tacaaaaggccattagtatgcaaaaatcataagagtggcctcagacatgtaaaaaactgc 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 340 tacaaaaggccattagtatgcaaaaatcataagagtggcatcagacatgtaaaaaactgc 281
Query: 61 attgggaggataaaagtctagaatatgcccaagcttatttctttaaaaactatttctatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 attgggaggataaaagtctagaatatgcccaagcttatttctttaaaaactatttctatt 221
Query: 121 aagggtgtgtgtgttaaagatcagtgaaagaagaagaaacagggccaggctatgcttaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 aagggtgtgtgtgttaaagatcagtgaaagaagaagaaacagggccaggctatgcttaga 161
Query: 181 gttgatgtgatattttagaaataacagacattggcaattcagctactattttgcttccac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 gttgatgtgatattttagaaataacagacattggcaattcagctactattttgcttccac 101
Query: 241 attccctatcaaagagaattatcttcaacctggaaatgacagaacaaactcggtaaaaag 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 100 attccctatcaaagagaattatcttcaacctggaaatgacagaacaaacgcggtaaaaag 41
Query: 301 gaatacaaagtctaagatcgttgaaaagataggaaaagaa 340
||||||||||||||||||||||||||||||||||||||||
Sbjct: 40 gaatacaaagtctaagatcgttgaaaagataggaaaagaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space: 444416
Effective search space used: 444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
