Query= MSMg01no356_d19.b1 MSMg01no356_d19.b1 CHROMAT_FILE:
MSMg01no356_d19.b1 PHD_FILE: MSMg01no356_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:54 2005
(576 letters)
>mm_chr9_54609097_54610073
Length = 977
Score = 1065 bits (551), Expect = 0.0
Identities = 563/567 (99%), Gaps = 1/567 (0%)
Strand = Plus / Plus
Query: 11 gaattctccctgc-cctgacccttcctttttctctggcctctcaccctggattcgttctt 69
||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 211 gaattctccctgcaccagacccgtcctttttctctggcctctcaccctggattcgttctt 270
Query: 70 tgtatggaattacttttagtcctcacaaaggggcccttctaaggctttgccatcctccaa 129
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tgtatggaatcacttttagtcctcacaaaggggcccttctaaggctttgccatcctccaa 330
Query: 130 cctgttccccattctttacagatcacccatcatgtcctttggggagaggagaggacattt 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 cctgttccccattctttacagatcacccatcatgtcctttggggagaggagaggacattt 390
Query: 190 gtggccctttgtccttggtgaaaggtttttctgcctgcttcttaggccacctgcctcacc 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gtggccctttgtccttggtgaaaggtttttctgcctgcttcttaggccacctgcctcacc 450
Query: 250 cctttccagttatgtagttcagccacactgaaaaacatgtagttctacataatcagacaa 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 cctttccagttatgtagttcagccacactgaaaaacatgtagttctacataatcagacaa 510
Query: 310 tgtacactcccatccctttcaggcctgttcttcaggttcaacccaggctagaccacgcac 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tgtacactcccatccctttcaggcctgttcttcaggttcaacccaggctagaccacgcac 570
Query: 370 cagcaggcaccgtcagcccatgtggtaagcactggttctagtttctcctcagtagaacag 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 cagcaggcaccgtcagcccatgtggtaagcactggttctagtttctcctcagtagaacag 630
Query: 430 ggagccctcagcaacaggccctgcctggatcctctgtccttggagctgcacccagttcct 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 ggagccctcagcaacaggccctgcctggatcctctgtccttggagctgcacccagttcct 690
Query: 490 gttccagacaggccttggcaaaggttcacaagcaagaaggcaaagaagcaggagaaaggg 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 gttccagacaggccttggcaaaggttcacaagcaagaaggcaaagaagcaggagaaaggg 750
Query: 550 agtggggatgcaggctcagaggatgta 576
|||||||||||||||||||||||||||
Sbjct: 751 agtggggatgcaggctcagaggatgta 777
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 977
Length adjustment: 10
Effective length of query: 566
Effective length of database: 967
Effective search space: 547322
Effective search space used: 547322
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no356_d19.g1 MSMg01no356_d19.g1 CHROMAT_FILE:
MSMg01no356_d19.g1 PHD_FILE: MSMg01no356_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:54 2005
(487 letters)
>mm_chr9_54792189_54793075
Length = 887
Score = 826 bits (427), Expect = 0.0
Identities = 465/489 (95%), Gaps = 20/489 (4%)
Strand = Plus / Minus
Query: 1 caggctagccaaggttacagagtgagactcttaacatacacgtgtcctgctc--ggacac 58
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 786 caggccagccaaggttacagagtgagactcttaacatacacgtgtcctgctcggggacac 727
Query: 59 acacacacacacacacacacacacacacacacacacacacacacacacacacacacaagg 118
||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 726 acacacacacacacacacacacacacacacacacaca-----------------a-aagg 685
Query: 119 atgaaggaaaactggggaaaacattttggaacaataatgagtacagatcatcacaaatca 178
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 atgaaggaaaactgaggaaaacattttggaacaataatgagtacagatcatcacaaatca 625
Query: 179 agacatatgcataattaattttatgtttgcagtccaaataaaggcaaagaataaaaatca 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agacatatgcataattaattttatgtttgcagtccaaataaaggcaaagaataaaaatca 565
Query: 239 caaaaattcatgaattaagcacctatttcaagaagcttttaaaaagcaaacagaaaacat 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 caaaaattcatgaattaagcacctatttcaagaagcttttaaaaagcaaacagaaaacat 505
Query: 299 ttgaaaaaaatagatatgagtaatttaagatacgataaagagggtcttgaaaaggtgttt 358
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 504 ttgaaaaaaatagatatgagtaatttaagataagataaagagggtcttgaaaaggtgttt 445
Query: 359 ccccaaaggatgagcccgagaagccagcgggaaaacataagaggtgctactgatctccaa 418
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 444 ccccaaaggatgagcccgagaagccagtgggaaaacataagaggtgctactgatctccaa 385
Query: 419 acagagcaaaaggacacatatcactaaagacctgatcagtatgaaaatatgagtaaagac 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acagagcaaaaggacacatatcactaaagacctgatcagtatgaaaatatgagtaaagac 325
Query: 479 agctggaga 487
|||||||||
Sbjct: 324 agctggaga 316
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 79
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space: 418329
Effective search space used: 418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
