BAC Information

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BAC

Clone NameMSMg01-356K01
Chromosome9 (Build37)
Map Location 108,679,011 - 108,679,487
singlet/doubletsinglet
Overlap genenone
Upstream geneRbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108, Dag1, Nicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a
Downstream geneIhpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14, LOC668758, EG382156, Fbxw16, Fbxw19, LOC635668, Fbxw15, EG382106, E330001B16Rik, C85627, EG382109, 1700124P09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356K01.T7 (MSMg01no356_k01.b1)MSMg01-356K01.TJ (MSMg01no356_k01.g1)
ACCAG466723AG466724
length1,061747
length of high quality
(start - end)		---477 (71 - 547)
definitionCHROMAT_FILE: MSMg01no356_k01.b1 PHD_FILE: MSMg01no356_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:24 2005CHROMAT_FILE: MSMg01no356_k01.g1 PHD_FILE: MSMg01no356_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACAAAAATAGAGCACGCCGCAGAAGAATCACGCAATACGAAAGAAAGAG
GGGGAGGCCACGGCTATTGCTACACAAGAACGAAGGAAGCGGGAAAAGAG
AGGGACACGTACAATGTAGTGAGCGCACCCGGCATCGTGTATTGTATACA
TGCGCTCCGTGTTCCCTCATATATAACTTTTGTTTTTACCCGCCAGCGGG
GCTGAGTAGCAAGATGTTCTCACCGAGGTCTGTTCTCAACGAGCTGCATA
TACCGCTGGTAATTATCCCCCTTCCACCCCGTTTTTTGCCCCTATTTGTC
GATCCTCTCACCACTTATGAGGTGTCGCGCTCAGCGGAGTGTTTTGCCAG
GACATTAGAGGCGGTATCAGGGAGGAAANAGCGAGAACATTTGGGGGGGG
CGGGGAGGCAAAAAGGAGCGCTGGCAAAAGCGCCCGTAAAATGGAAGCAC
CAACCGTCACTAAACGGTCGTGCTGTAGGATTATGTTAAAGCCGTCACCG
AGGTCACGAGAGCGGGAGAGCCAGATGAATTGGGCGAAGTGGATAGGGCG
GGCGGAAGGGATGAAGGTTTGAGGCGCCGCGAATTCGCGCGAGTCGAGCG
CCGGAATGGGGTGGTGTCACCGGCGCCAGGTAAGACGAGGAGTATATCAG
CGATGTATTGCGAAAAACAATAGAAAGAGACTATTACGACTAGCCTATCA
GGCCACAACGGCGCGAATACGATGGAATCAAGAGGTGTGGATGGATCCGG
GTTGGCAACGGAAAAAGGAGAGAAAGACGAGACGAGAGCGTGAGTGGGGA
GCGGATATTAAATAAACAGTATGCGCCGCCTCGGAGGGCGCGACGGAGAT
AGGAGGATGAGTGTATGAGCGGCGACGGCGGGGAGAGGGGACAAAAATAG
CGGCGGGCGCCGTATGACCGCAGGGACGAAGAGAAATGTTAGGTTATAAT
AGGAGCCATACCACCGGATATCGTATAATCACTTACGACACATTTATATT
GATGCAGCACATGTAAATGAATGTAGGATGGGTATAGCGCACGCAGTGTA
CCGTNACTAAN

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTATGGGCAGCAGATTTCTTGAAGCCTTGGA
CCCTCTCTTTTTGGGAGGGAGTCCTTCTTTATATCATTTTTTGAATCAGG
GTCTTATCCTGTGGCTCAGGCTAGCCTGGGACTCACTACATAGCCCATGC
TGGCTTCAAACTAGAGGCCATCCTCTAGCCTTAGCCTTCTGACTGTTGGG
GTTATAAGCATGAGCCACTGTAATGAAATCGATCTCTCATCTTCTTCTGT
CTTCTGGCAACCTACGCTGCTACCAGCTGTCAAGGCTGTCCCTAGCACAG
CAAAAACTAGCCCTAGGGTTGGGCTCAGAAGCCTCCACCCTCACCTAGTG
AGATTGCTAGAAAGCCTAGCCCAGTTCCTGCCCAGATACCAGACAGTGGT
ATCAGCACTGGGTAGAGGCACATAGCCACTGCAGTGCTACAATGTTACAA
ACCACTGTTATACCTTCTCCCCATCCAAGCTTCTATTTCAGGGCTCCTTC
CTAGGTGAGGAGTGGAAAGCTGGACCAGGTAGCCCCAGCATTACCTAATT
CACTCTCGCTCCTTCTGTTAAATGCTTCCTAGAGGCTGCCTTGTATAAAA
CCTCGGGTAGGGGGTAGACTGGTTTTTTTTAGAGTGGTTCCCGATTGGTC
GTGGCTTCCTTTCCTGTGTTCTGCATCGCTCCCGTGTTTTCCTTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_k01.g1 MSMg01no356_k01.g1 CHROMAT_FILE:
MSMg01no356_k01.g1 PHD_FILE: MSMg01no356_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:25 2005
         (477 letters)



>mm_chr9_108678613_108679489
          Length = 877

 Score =  899 bits (465), Expect = 0.0
 Identities = 474/477 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatgggcagcagatttcttgaagccttggaccctctctttttgggagggagtccttcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tatgggcagcagatttcttgaagccttggaccctctctttttgggagggagtccttcttt 816

                                                                       
Query: 61  atatcattttttgaatcagggtcttatcctgtggctcaggctagcctgggactcactaca 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 815 atatcattttttgaatcagggtcttatcctgtcgctcaggctagcctgggactcactaca 756

                                                                       
Query: 121 tagcccatgctggcttcaaactagaggccatcctctagccttagccttctgactgttggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 tagcccatgctggcttcaaactagaggccatcctctagccttagccttctgactgttggg 696

                                                                       
Query: 181 gttataagcatgagccactgtaatgaaatcgatctctcatcttcttctgtcttctggcaa 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 gttataagcgtgagccactgtaatgaaatcgatctctcatcttcttctgtcttctggcaa 636

                                                                       
Query: 241 cctacgctgctaccagctgtcaaggctgtccctagcacagcaaaaactagccctagggtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 cctacgctgctaccagctgtcaaggctgtccctagcacagcaaaaactagccctagggtt 576

                                                                       
Query: 301 gggctcagaagcctccaccctcacctagtgagattgctagaaagcctagcccagttcctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gggctcagaagcctccaccctcacctagtgagattgctagaaagcctagcccagttcctg 516

                                                                       
Query: 361 cccagataccagacagtggtatcagcactgggtagaggcacatagccactgcagtgctac 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 515 cccagataccagacagtggtatcagcactgggtagaggcacatagccactgcagtgttac 456

                                                                    
Query: 421 aatgttacaaaccactgttataccttctccccatccaagcttctatttcagggctcc 477
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aatgttacaaaccactgttataccttctccccatccaagcttctatttcagggctcc 399


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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