BAC Information

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BAC

Clone NameMSMg01-357C15
Chromosome9 (Build37)
Map Location 77,507,503 - 77,508,062
singlet/doubletsinglet
Overlap geneKlhl31
Upstream geneTinag, LOC436082, 2310046A06Rik, 5730403I07Rik, Lrrc1
Downstream geneGclc, LOC100042212, Elovl5, Gcm1, LOC666353, Fbxo9, Ick, C920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1, Slc17a5, Cd109
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357C15.T7 (MSMg01no357_c15.b1)MSMg01-357C15.TJ (MSMg01no357_c15.g1)
ACCAG467132AG467133
length736681
length of high quality
(start - end)
560 (68 - 627)---
definitionCHROMAT_FILE: MSMg01no357_c15.b1 PHD_FILE: MSMg01no357_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:05 2005CHROMAT_FILE: MSMg01no357_c15.g1 PHD_FILE: MSMg01no357_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACTATTTTCTCAAGTTAAATGGACTTAAGACAATTGGTTGCATT
TGTTTTCCCTTAGTTACAACAGACTCCACCTCTGTAATTGCTGAGAGCTG
GACCCCTACCCCAGCATAGGCACAAGGCAGCAAGAAAAGGCATTCTTTTC
ATAGCAATACAATTTATACTCAATACTTTCCATTCTAAATTACTAAAACT
AAAGGATTAAAATATTAACAATTTACCCCCATAATGTGCCATTTAGCATT
CCCTCAAACAGAGTTTGACACAAAATGTTTATCTTGGACACTCCTAAAAA
ATGTTTGTTGTGGTTGTTTATCCAGCAAATTTTGGCAGAAATCTTGTTGG
CTTAAAACATTCTGGTTTCCTGTAAAGAACAACAAAGAAACCCATACGTT
GTGTTATTTTGTAACTTCACCACTGTTAATAAAGCTGCATATAAAAAGAG
TTTGATCCATGCTCACATGCAGGCAGCTTTGAGTATTGTTTCTTTGATGC
TTGGAGTATTTATGTTTTTCTTATTTAGNTGTAGCTATTCAGCGAAGTGG
AAACAGCATCAGCAAAAAGAAATGTTCGTTGAAAATGTTTCCACAGCTTG
GAGTTAGAAAAAGAAAGAGGGCATAAACAGTGGTTAGAACGACAGAAACC
CAATGTTGCCCTTCCGTACTGATAACTACAATATTN
CCCCAATATTTNNNNNNNNNNNNNNNNNNNNNNNCCCAATTXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCGGTAACAGCCATTTAAAAGTCTCT
TTANTCCTTTGCCAGGTTNNTGGTGTTATGGGTGGTGTGGTTGTTTGGTT
TACAACACCTTCTTGGCATTTCCGAATGTCTCGGTNTTTTTTTTTTCATA
TCTCTTGANGNNNNNNAATTTCCCCCTCTCCCACCTCCTTTNNNCTAATT
CTCNNNTTCCCTTTTCTCCNNCNCTTTGCTCCTCCNNTTCAATTTTTCTT
TCTTNNNCAAANNNAAATTTNTTTAACATTTTAAACTTTTTAACCTCTTT
NTTTTTTATCACCCNNCCAAACACCCTCCTTTTTTTTACCATTTCNNTTN
TNNNNNCCNCNNTTATACCCCCCTCCCTCCTTTCTTTTNTTNNTCCCNNN
TTTTTNNNGAAAAGAACAAAAAAAAAAAAGGTCCTCNGGGGGCTCCGGAG
TAANNNGTGGTCGCCTTGAAAAAAAACTAAATNACTTCCTTAAAATATTG
NNNNNNTTNNNCNCCCTCNTCCTTTTTTCTCTCTTTTCCCCCTTTTTTCT
TTCTTTTTCNNNNNNNNNNNNCTTCCTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_c15.b1 MSMg01no357_c15.b1 CHROMAT_FILE:
MSMg01no357_c15.b1 PHD_FILE: MSMg01no357_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:05 2005
         (560 letters)



>mm_chr9_77507303_77508262
          Length = 960

 Score = 1002 bits (518), Expect = 0.0
 Identities = 550/561 (98%), Gaps = 2/561 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagttaaatggacttaagacaattggttgcatttgttttcccttagttacaacagactcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagttaaatggacttaagacaattggttgcatttgttttcccttagttacaacagactcc 260

                                                                       
Query: 61  acctctgtaattgctgagagctggacccctaccccagcataggcacaaggcagcaagaaa 120
           ||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 261 acctctgtagttgctgagagctgggcccctaccccagcgtaggcacaaggcagcaagaaa 320

                                                                       
Query: 121 aggcattcttttcatagcaatacaatttatactcaatactttccattctaaattactaaa 180
           ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 321 aggcattcttttcatagcaatacaaattatactcaatactttccattctaaattactaga 380

                                                                       
Query: 181 actaaaggattaaaatattaacaatttacccccataatgtgccatttagcattccctcaa 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 actaaaggattaaaatattaacaatttacccccataatgtgccatttagcattccctcga 440

                                                                       
Query: 241 acagagtttgacacaaaatgtttatcttggacactcctaaaaaatgtttgttgtggttgt 300
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 acagagtttgacacaaaatgtttatcttggacactcctaaaatatgtttgttgtggttgt 500

                                                                       
Query: 301 ttatccagcaaattttggcagaaatct-tgttggcttaaaacattctggtttcctgtaaa 359
           ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 501 ttatccagcaaattttggcagaaatctct-ttggcttaaaacattctggtttcctgtaaa 559

                                                                       
Query: 360 gaacaacaaagaaacccatacgttgtgttattttgtaacttcaccactgttaataaagct 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gaacaacaaagaaacccatacgttgtgttattttgtaacttcaccactgttaataaagct 619

                                                                       
Query: 420 gcatataaaaagagtttgatccatgctcacatgcaggcagctttgagtattgtttctttg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gcatataaaaagagtttgatccatgctcacatgcaggcagctttgagtattgtttctttg 679

                                                                       
Query: 480 atgcttggagtatttatgtttttcttatttagntgtagctattcagcgaagtggaaacag 539
           |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 680 atgcttggagtatttatgtttttcttatttagttgtagctattcagcaaagtggaaacag 739

                                
Query: 540 catcagcaaaaagaaatgttc 560
           |||||||||||||||||||||
Sbjct: 740 catcagcaaaaagaaatgttc 760


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)