BAC Information

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BAC

Clone NameMSMg01-357G09
Chromosome9 (Build37)
Map Location 97,271,646 - 97,272,129
singlet/doubletsinglet
Overlap genenone
Upstream geneBC043934, Rnf7, LOC667174, Rasa2, Zbtb38, EG622512, LOC100040230, LOC667216, Acpl2, LOC19034, LOC667226, Spsb4, LOC100040254, Slc25a36, EG622727, LOC384971, Trim42
Downstream geneClstn2, LOC667298, Nmnat3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357G09.T7 (MSMg01no357_g09.b1)MSMg01-357G09.TJ (MSMg01no357_g09.g1)
ACCAG467310AG467311
length762758
length of high quality
(start - end)
435 (43 - 477)484 (72 - 555)
definitionCHROMAT_FILE: MSMg01no357_g09.b1 PHD_FILE: MSMg01no357_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:23 2005CHROMAT_FILE: MSMg01no357_g09.g1 PHD_FILE: MSMg01no357_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTCTGTACATCAGTCTGGCCTCAAATTCAGAGCTCTCTCTGCCTTTG
CCTTCTGAGGGGTGGGATTAAAGGCACATGCCAGAAAGATAGTCTTTAAG
GAAACATAGCAAGAAACACTGATGATCTGGACAAAAGGGCCTTCTACACT
ACTGGGGAGGAATGTAAACTAGCCCAATGCTACAGAAGTCAGTTTGGAGG
TTTCCCAAAAAGCTCACATAAGCCTCCCATATGCCAGCTGAGGGCATTGC
TGGAAGCCTGCCTGGTCTGGAATGGGCTGACAGGGGACTCAGTGTCAAAT
GTAGGCCAAAAGATTGATTCTCACCTGCCCTTTAACTCTTTCAGACTATT
TTGTGCTAAAAACTTAACTCTTTATTACTTATGCTTGAATAAACACCAAT
ATCTGGCGTTTAACCCATGCTGTTTAGCGGTGCGAAATTATTGGATTTTA
TGCCAGTATGCCCTTTTTTTGACCAGTCAGCCCCCTCTTGGCCCGGCTGA
TTACCTCCTGTGGTAATACACAGGAATAAGGTTACCTGACCTAACATGCT
TTCTTCTCGCTACACTGGCCTTCATCTCTTTCACATTCATTTATTCCACC
CCTCCTGTTTCTTTTCCCCATTGCCGCATTCTCATCCACCTTCCTCGATC
CTTTTTCCCATCTCCCTTCTCTGCCTCATCCCTATCCCTATTCCCTTCTC
TCCTTCTTTCCC
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACCAAAAGGCATTGACTGGATCACTCTAA
TGGTAAGTGAATTACACCTTGCTAATGTTTTTAAGAACAGAAAGGAAAGG
ATGCCTTATATAAACCAATGTTGAAATGGCCTATAAGTCGAACTCAGGTC
TTTGTGTTCCCAAGGGTAGGGAGGCTTATTGATAAAACTGAGTTTGAGCA
AACATAAGAGGAAGTGTCATACATCTATTCCTGGTGTTGGTGTGATCTGG
AGTATGCTTCACAGTGATAACTTAGTAATGTCTACGAAAGATAAAGTGCA
CACCCTAGGATTCGGGATTTTCTATTGTAGAGATCTAAACTCCATGTGAG
GCTGGCCCAGTTAGCACTCCGAGAATGTTCTTTCCTATTACACGGGTGAT
GATCATGGGAAGAGGTAATAAATTATTCACTAAACTCCCACAGCCAAATT
CAGCTCTCACTTCTGCTGTTTTTTAGAAATATAATGAGACAGCGGTCCTG
TTCTAGGACGGCATGGCCGCGAGACCTCTGCTCCTTTAATCTTTGCAAGC
TGTATGAAAGGGAAAGCAAGACTTCCCCTGATTGATATGGCGTTTTTTCT
ATAATTTCTGTTGGTCCTCTGTTAGAACATCTAAAGATTCTGCCCCCCCC
TGATTATAGAATGTTTTGTTCGTTGTCTTTCCCTACTTTCTTTTTCCTCT
CCTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_g09.g1 MSMg01no357_g09.g1 CHROMAT_FILE:
MSMg01no357_g09.g1 PHD_FILE: MSMg01no357_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:23 2005
         (484 letters)



>mm_chr9_97271446_97272329
          Length = 884

 Score =  928 bits (480), Expect = 0.0
 Identities = 483/484 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   accaaaaggcattgactggatcactctaatggtaagtgaattacaccttgctaatgtttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 accaaaaggcattgactggatcactctaatggtaagtgaattacaccttgctaatgtttt 625

                                                                       
Query: 61  taagaacagaaaggaaaggatgccttatataaaccaatgttgaaatggcctataagtcga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 taagaacagaaaggaaaggatgccttatataaaccaatgttgaaatggcctataagtcga 565

                                                                       
Query: 121 actcaggtctttgtgttcccaagggtagggaggcttattgataaaactgagtttgagcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 actcaggtctttgtgttcccaagggtagggaggcttattgataaaactgagtttgagcaa 505

                                                                       
Query: 181 acataagaggaagtgtcatacatctattcctggtgttggtgtgatctggagtatgcttca 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acacaagaggaagtgtcatacatctattcctggtgttggtgtgatctggagtatgcttca 445

                                                                       
Query: 241 cagtgataacttagtaatgtctacgaaagataaagtgcacaccctaggattcgggatttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cagtgataacttagtaatgtctacgaaagataaagtgcacaccctaggattcgggatttt 385

                                                                       
Query: 301 ctattgtagagatctaaactccatgtgaggctggcccagttagcactccgagaatgttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctattgtagagatctaaactccatgtgaggctggcccagttagcactccgagaatgttct 325

                                                                       
Query: 361 ttcctattacacgggtgatgatcatgggaagaggtaataaattattcactaaactcccac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttcctattacacgggtgatgatcatgggaagaggtaataaattattcactaaactcccac 265

                                                                       
Query: 421 agccaaattcagctctcacttctgctgttttttagaaatataatgagacagcggtcctgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agccaaattcagctctcacttctgctgttttttagaaatataatgagacagcggtcctgt 205

               
Query: 481 tcta 484
           ||||
Sbjct: 204 tcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)