BAC Information

Click to search

BAC

Clone NameMSMg01-357L06
Chromosome9 (Build37)
Map Location 18,675,924 - 18,676,280
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665548, LOC665554, LOC665567, Chordc1, Naalad2, B020006M18Rik, Map1lc3-ps, Mbd3l2, Zfp558, Mbd3l1, Muc16, Olfr24, Olfr828, Olfr829
Downstream geneOlfr830, Olfr831-ps1, Olfr832, GA_x5J8B7W6RL5-13870817-13871726, Olfr834, Olfr835, Olfr836, Olfr837, GA_x5J8B7W6RL5-13695863-13696754, Olfr839-ps1, GA_x5J8B7W6RL5-13645512-13646298, Olfr841-ps1, Olfr842-ps1, Olfr843, Olfr845, Olfr1522-ps1, Olfr846, LOC665697, Olfr847, GA_x5J8B7W6RL5-13451244-13452122, Olfr849, Olfr850, Olfr851, Olfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859, Olfr860
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357L06.T7 (MSMg01no357_l06.b1)MSMg01-357L06.TJ (MSMg01no357_l06.g1)
ACCAG467538AG467539
length766761
length of high quality
(start - end)		482 (45 - 526)428 (77 - 504)
definitionCHROMAT_FILE: MSMg01no357_l06.b1 PHD_FILE: MSMg01no357_l06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:46 2005CHROMAT_FILE: MSMg01no357_l06.g1 PHD_FILE: MSMg01no357_l06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATATCTTTTGAGGTAGGAAGGTTTACCTTTAATCTGGGGCACACCT
TCCAGTTGTATCCTATTAAAGGGAAAGAAAGAGTACTCTCCATCTCACTA
GGAAGTCCATTCCTTCGATGAAATTGAAGCCTAATTCTTGTGGATTCTGG
CATATACTAAAGACAATCAACTGAGACATCCAGCATGAAGACTATACAAT
GATTGGACTCTTGGACCTTCTATTGGTACACAACCACTGTTGGACTAGCT
GGACAACAGCCTGTCAGCCATTCTAATAAATGCCATTTTCTGAGTTCTGT
TCTTCTGGAGATTCCTGACTAATATAACATCATTTCTCAGTTGCATTGAG
AAGCCATGTGCATGAGTCTGGAGAGAGATGTGTCAATAGTTAAGAGAGTG
TACTGTTTGCATAGGATCCAAAATTTGATTTAAGGATCCATACTAGGTAT
CTCACAACTACCTGGAAATCTAACTTCAGGGATATCTGATATCATAATCC
CTGTGGACAATTGTACTAATGTGTATATACCTAGATGCAGACCAACACCT
GTACCATCTTTTAAAATAAAAAAACCCTAATTAAAGCTGTGAAGGGAAGT
GGCGCGAACCTCTTTTTGCAAAGGGTTTGCTTTACCATGGCCACGACTTT
GTTTTTTGTTTTCTTCTACCCCCCCACACGTGGCTTGGGTTCTTTTCCCT
TCCCTTTTTTTTTGTN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATTACCACTTTGAAAAAGTATAG
AGAAAGTACACATGATATTTTGCTCTTGATTTTAGTGGAAATGCTTTGAC
TTACTCTATATTTATGCTTATATTATTTGCAGGTTTGTTTTGCAAGGATC
TAATTCTGTTAAGGTCTCACTATTTTCTTCAAAATGTTTATTTTAAAAAG
ATATAAAATTTTGCAAAAGGCCTTTCTTTATTTAATAAGATGATCATGTG
GTTTCTGTCCCTTGGTCTGTGTTTTGTTTTGTTTTGTTTTGTTTTGTAGA
TAATGTTTATTGCTTTCTGGGTATAAGACAGACATGGGTCATGCTGTGTG
AAGTATATGACTGGGTAAAGTATCTATATTCTTTAATTCAATTGGAGGAA
TCATTTGAAAAAGAGTCTAAATGTCCCTCTATAGATTAAACAAATAGGAA
TGGACATAGACATAGAGAGGCCTTTGGGCTTCAGCCACCTCCCTGAAAGA
ATAGATCCCATCATTGTGAGACCTGGTGCTAGTTGTTAGGGAAACAATAA
AAGAACTGGACCTCATGAAATGCTACAACTGTTCTTACCCATATTTTTCC
CCCAAGGAAAAAGCCCCTATTCCTTTCCTTTGTCATCCAACAACTAATAC
CCCCTTCTCACTTCATTCTTCATCCCTTTTTCTCTTTTTTCCATCATTTT
TTTCCCCAGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_l06.g1 MSMg01no357_l06.g1 CHROMAT_FILE:
MSMg01no357_l06.g1 PHD_FILE: MSMg01no357_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:46 2005
         (428 letters)



>mm_chr9_18675453_18676280
          Length = 828

 Score =  661 bits (342), Expect = 0.0
 Identities = 355/362 (98%), Gaps = 5/362 (1%)
 Strand = Plus / Minus

                                                                       
Query: 67  gctttgacttactctatatttatgcttatattatttgcaggtttgttttgcaaggatcta 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 gctttgacttactctatatttatgcttatattatttgcaggtttgttttgcaaggatcta 769

                                                                       
Query: 127 attctgttaaggtctcactattttcttcaaaatgtttattttaaaaagatataaaatttt 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 attctgttaaggtctcactattttcttcaaaatgtttattttaaaaagatataaaatttt 709

                                                                       
Query: 187 gcaaaaggcctttctttatttaataagatgatcatgtggtttctgtcccttggtctgtgt 246
           |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||   
Sbjct: 708 gcaaaaggcctttcttcatttaataagatcatcatgtggtttctgtcccttggtctg--- 652

                                                                       
Query: 247 tttgttttgttttgttttgttttgtagataatgtttattgctttctgggtataagacaga 306
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 --tgttttgttttgttttgttttgtagataatgtttattgctttctgggtataagacaga 594

                                                                       
Query: 307 catgggtcatgctgtgtgaagtatatgactgggtaaagtatctatattctttaattcaat 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 catgggtcatgctgtgtgaagtatatgactgggtaaagtatctatattctttaattcaat 534

                                                                       
Query: 367 tggaggaatcatttgaaaaagagtctaaatgtccctctatagattaaacaaataggaatg 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tggaggaatcatttgaaaaagagtctaaatgtccctctatagattaaacaaataggaatg 474

             
Query: 427 ga 428
           ||
Sbjct: 473 ga 472


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |