BAC Information

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BAC

Clone NameMSMg01-357L19
Chromosome9 (Build37)
Map Location 81,452,124 - 81,452,405
singlet/doubletsinglet
Overlap geneLOC100039038
Upstream geneEG666534
Downstream geneHtr1b, LOC671392, 4930486G11Rik, LOC100039085
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357L19.T7 (MSMg01no357_l19.b1)MSMg01-357L19.TJ (MSMg01no357_l19.g1)
ACCAG467563AG467564
length771756
length of high quality
(start - end)		509 (40 - 548)320 (71 - 390)
definitionCHROMAT_FILE: MSMg01no357_l19.b1 PHD_FILE: MSMg01no357_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:49 2005CHROMAT_FILE: MSMg01no357_l19.g1 PHD_FILE: MSMg01no357_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAA
GTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTG
ATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTC
TTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTC
CCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCA
GGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCC
TCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTT
AGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCGTTCTTC
TACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCT
TTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATA
GGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTTCCTTGGTCTACTT
GTCTGCCTCTATACCAGTACCCATGCGTTTTTATCACAATTGCTCTTGAT
CAAATCTTTAGCCCTGTGCTGCGGGTTCCTGCCCCAAATTTTCTTATTCT
TTATAAAAATCTTTTCTTATTCCACTTCTCTTTTGTTTCTTCCTATAACA
CTTCCCAATTTTCCCCTTCAN

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATCTGTAGATGTCACAAAGGCAAGGCTCAC
ATTCTGTGCTTATAGGCTCTTACAGTTTCACATACAGACACAGAATTTGT
GACGCGTGTGGCTGAAAGCACTGTAGCAGGAGACACATAGCGCTCATGCT
ATGGCAGGGCATGTTTCTCTTTATCCTGTCCAGAACTCCTGGGGGGGGGG
TTGTAGCTAAGATGCTTCTGTTATAGTCAGAGATGCCAAGGTTATGCTTT
AGTGTGGCATAGCTTTTCTTTTCTTTTATTATATATATATATATATATAT
ATATATATATATATATATATATATATATATATATATATACACATACATAA
AACCTGGTNCATAAGCTTAGGTATCTCCTTTACTTTTAAGATACACATCA
CTGAGAAATCTCTGTGTTTAAAGTATCAGAACTTTTGGATAGAGATATCG
ATCGTGGGTAGGCCCTCTTTGTGAGTGATTTTCTTTATCATGCATTGAAT
GTTTGTGTGAGATCCAAGTGTGTGGTATACCCACCCCTTCCCCTCTTAAT
CCTTCCCTCTTCCTTCTATTTTGACTTCTCATCATTCTCTTTTTTTTTAT
CCCACAATAAAATTCTTTTCCTCTAAAGCTCATTCCTCCACTTCCATCTT
TCACTACATGTAATATCTATATACTCATCTCTTCTCCTTTTTTATTTTTT
TTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_l19.g1 MSMg01no357_l19.g1 CHROMAT_FILE:
MSMg01no357_l19.g1 PHD_FILE: MSMg01no357_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:49 2005
         (320 letters)



>mm_chr9_81452076_81452795
          Length = 720

 Score =  375 bits (194), Expect = e-108
 Identities = 262/292 (89%), Gaps = 16/292 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctgtagatgtcacaaaggcaaggctcacattctgtgcttataggctcttacagtttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 330 atctgtagatgtcacaaaggcaaggctcacattctgtgcttataggctcttacagtccca 271

                                                                       
Query: 61  catacagacacagaatttgtgacgcgtgtggctgaaagcactgtagcaggagacacatag 120
           |||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||
Sbjct: 270 catacagacacagaatttgtgatgcatgtggcggaaagcactgtagcaggagacacatag 211

                                                                       
Query: 121 cgctcatgcta----tggcaggg--catgtttctctttatcctgtccagaactcctgggg 174
           | ||||||||     |||  |||  | ||||||||||||| |||||||||||||||||||
Sbjct: 210 cactcatgctgggggtgg--gggtgcgtgtttctctttattctgtccagaactcctgggg 153

                                                                       
Query: 175 ggggggttgtagctaagatgcttctgttatagtcagagatgccaaggttatgctttagtg 234
           ||    |||||||||||||||||||||| |||||||||  ||||||||||||||||||||
Sbjct: 152 gga---ttgtagctaagatgcttctgttttagtcagaggggccaaggttatgctttagtg 96

                                                               
Query: 235 tggcatagcttttcttttcttttattatatatatatatatatatatatatat 286
           ||||||||||||| ||||     |||||||||||||||||||||||||||||
Sbjct: 95  tggcatagcttttatttt-----attatatatatatatatatatatatatat 49


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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