BAC Information

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BAC

Clone NameMSMg01-357N01
Chromosome9 (Build37)
Map Location 80,062,560 - 80,062,981
singlet/doubletsinglet
Overlap geneMyo6
Upstream geneLOC436085, LOC235509, LOC666479, Col12a1, Cox7a2, Tmem30a, Filip1, LOC100041218, LOC666490, Senp6, LOC100041249
Downstream geneImpg1, EG666534
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357N01.T7 (MSMg01no357_n01.b1)MSMg01-357N01.TJ (MSMg01no357_n01.g1)
ACCAG467623AG467624
length7251,186
length of high quality
(start - end)
653 (49 - 701)---
definitionCHROMAT_FILE: MSMg01no357_n01.b1 PHD_FILE: MSMg01no357_n01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:55 2005CHROMAT_FILE: MSMg01no357_n01.g1 PHD_FILE: MSMg01no357_n01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGAGTTCAAGACACATATTTAACCTCGCTCCTTCATCACAGC
CCTAAACCTACAGGGAAGTGATTCCTAGAAAAATCTTTCAGAGCGGCTGA
GACATCTCAGTAAATAAAAGTGTTGGCTACCAAACCTGACAATCAGAGTT
TGTTCAACTCCCAGACCCCACATAGTGAAAGAAGGTGAGACCTGTGTTTC
TGAAAACTGTCCTCTAACCTACATACATACATACACACACACACACACAC
AGAGAGAGAGAGAGAGAGAGAGAGCCCCTTTGTGCCAACCCTCACTCTCA
CTAAGCATGTTTACATATGCAGAGCACCTTACAGCTTTGTAAAGCAGACA
CAGTAGCTCATCACTACAATTGCAACACTCAGAGGCTGAGGCACAGCAAT
CACCACAAACTCAAGTCCAGCCTGGGCTACATACTGAGACCTTTCTTAAT
AAAACAAAAAATAAACAAACAAAAGTCTCTATAAAGTGACCCATTACAGG
GCAGCCTCGATTCCCAGTACTACCGCCCTAGATACCTTAAGCTCTGTAGA
AGACAGGCTGCAGAAATACAGAGTGGAAAGGAAGTCAGTTAGCTTAGCTG
GGATCCCTTATGGAAGTTTGGTCGGCAACATTCCCAAAGTCACTGCTGGC
AGACACCATCATTAACCGAAAACGA
NCCCAAAGNCGCCGCGNATNAGGGAAGGNGGGCTGCGGAAATCCGTTAGC
GAGGGTGGGGAGNAANNNAAATAGAATTCCTACAAAAGAGGGGGAGGGGN
GAGAGAGAGAGAAATAATAACGANACTGGAGAGGGGAGAGGGGGTTTTTG
TGCCCACATAATGGTGAGAGAGGAAGAGATGTAAAGAGGAGAATGAGTCC
GTCACATAGAGCCAACGGTGCCGAGAGCCGCGCGACTTCACTGTCAGTTA
TCTTTTAAATGCACACAGTCGGCTAGCTATGCGTGCCGGGTGGCTGAGCT
CAGCAGATTGTTGTTCGTTATCAGACTCGATTGTCAGTTGAAGAAGGACC
GTATTCAGATGGCATAGATAAGAATAGATAGAGGGGACTAGGAGTGGGGA
GGAGGAGGGAAGAGGAAAGAGAGGAGCAGAAGGAGGGGATGGAAGCCGGG
GTGGCTTATCGTTTTTTTTGTTTGTTTGTGCGCCGCGCTTCGTAGCACGG
CGCTGAGAAAGCCGCAAACGTGCGGATAGTGTTTATCTTCGACTGATTAC
TTCTTGTTACATATATAGTGAAGAGATATTAGCGCGTACTGGTTGAACAC
TAAATTGAGATGACACAACACGCACACATAGAAGTAAGCAAGTAGCAGTG
ACATACTTAACGCCCAATAACGCATCTTGTGGCCGAGGAGAGGATCAGAT
CTTATAGCTCTCTCGTACCAGGCACGATAGCATATAGTAGGCAACTTGCA
GGTACTGTGCGGCGACAACACATTACAACTATGAGATGACCATACTATGT
ACACCACCAGCACCAGAGAGCGCGCGTGGCCCGGCGTTATAGTTTTGTGA
CGATGTTATGCACTCACCGTATGAATATATAACAGACTCTCAAGATCACG
GTATGTAATAAAAGCACATGAGAAAGGCGATAACGCGACAATTCAAGACA
AGACAGCAGAAGAGGAGGAAGCGGCGCAGCCGTGAGACCCAACCTATGTG
GTATTCAAGATATCATAAGATCAACTACTCTGTATGTAGGGCCGTAGGCG
GCCTGCGAACTGCACACTAGGCCGAAGTGTAGTGTCTAACAATACACTAT
ATCCACCAGTTTACGTACACGGCATAGCCCGTATAAATGTCATTTCACTA
CCAACTGACTAATGTNGTGTATCTGTATCACTCGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_n01.b1 MSMg01no357_n01.b1 CHROMAT_FILE:
MSMg01no357_n01.b1 PHD_FILE: MSMg01no357_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:55 2005
         (653 letters)



>mm_chr9_80062560_80063612
          Length = 1053

 Score =  754 bits (390), Expect = 0.0
 Identities = 416/428 (97%), Gaps = 6/428 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgagttcaagacacatatttaacctcgctccttcatcacagccctaaacctac 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ggaattctgagttcaaggcacatatttaacctcgctccttcatcacagccctaaacctac 363

                                                                       
Query: 64  agggaagtgattcctagaaaaatctttcagagcggctgagacatctcagtaaataaaagt 123
           ||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 362 aggaaagtgattcctagaaaaatctttcagggctgctgagacatctcagtaaataaaagt 303

                                                                       
Query: 124 gttggctaccaaacctgacaatcagagtttgttcaactcccagaccccacatagtgaaag 183
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gttgactaccaaacctgacaatcagagtttgttcaactcccagaccccacatagtgaaag 243

                                                                       
Query: 184 aaggtgagacctgtgtttctgaaaactgtcctctaacctacatacatacatacacacaca 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||      |||
Sbjct: 242 aaggtgagacctgtgtttctgaaaactgtcctctaacctacatacatacat------aca 189

                                                                       
Query: 244 cacacacacagagagagagagagagagagagagcccctttgtgccaaccctcactctcac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 cacacacacagagagagagagagagagagagagcccctttgtgccaaccctcactctcac 129

                                                                       
Query: 304 taagcatgtttacatatgcagagcaccttacagctttgtaaagcagacacagtagctcat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 taagcatgtttacatatgcagagcaccttacagctttgtaaagcagacacagtagctcat 69

                                                                       
Query: 364 cactacaattgcaacactcagaggctgaggcacagcaatcaccacaaactcaagtccagc 423
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cactacaattgcagcactcagaggctgaggcacagcaatcaccacaaactcaagtccagc 9

                   
Query: 424 ctgggcta 431
           ||||||||
Sbjct: 8   ctgggcta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)