Query= MSMg01no358_f17.b1 MSMg01no358_f17.b1 CHROMAT_FILE:
MSMg01no358_f17.b1 PHD_FILE: MSMg01no358_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:36 2005
(489 letters)
>mm_chr9_53418274_53419162
Length = 889
Score = 739 bits (382), Expect = 0.0
Identities = 394/398 (98%)
Strand = Plus / Minus
Query: 92 cttagcaatgggttacacaaatatgagaattatcatgtaatatcagttaatgcactgttt 151
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 889 cttagcaatgggttacacaaatgtgagaattatcatgtaatatcagttaatgcactgttt 830
Query: 152 ctgtttcgttttaattatttggagacagggtctccgtctgtagttttagttgttcaagga 211
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 829 ctgttttgttttaattatttggagacagggtctccgtctgtagttttagttgttcaggga 770
Query: 212 ctcgctatgtggaccaggctggcgtcgaactcatagagatccacctgcctctttcctgag 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 ctcgctatgtggaccaggctggcgtcgaactcatagagatccacctgcctctttcctgag 710
Query: 272 tgtgtcccaccacacccagcctgcggggagtttctttgaaagttgatgtaatcttattat 331
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 tgtgtcccatcacacccagcctgcggggagtttctttgaaagttgatgtaatcttattat 650
Query: 332 tactcagtgaagtttagatagtaatatgtattttacttagcatcctacagaaaaacaact 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tactcagtgaagtttagatagtaatatgtattttacttagcatcctacagaaaaacaact 590
Query: 392 tcaacattcttttaacgtaagaaattggtttatttgtattataaatgaatataatgggaa 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 tcaacattcttttaacgtaagaaattggtttatttgtattataaatgaatataatgggaa 530
Query: 452 ttgctggaaacatttaccaacatcctttgtctgggtaa 489
||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ttgctggaaacatttaccaacatcctttgtctgggtaa 492
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space: 421041
Effective search space used: 421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no358_f17.g1 MSMg01no358_f17.g1 CHROMAT_FILE:
MSMg01no358_f17.g1 PHD_FILE: MSMg01no358_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:36 2005
(428 letters)
>mm_chr9_53243349_53244178
Length = 830
Score = 795 bits (411), Expect = 0.0
Identities = 425/431 (98%), Gaps = 4/431 (0%)
Strand = Plus / Plus
Query: 1 aaagagcataatccatgccctcccctacccccccccctgcactggcccacctcctaaaga 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 aaagagcataatccatgccctcccctaccccccccc-tgcactggcccacctcctaaaga 259
Query: 61 tgttggaagtgtatggatgacttaatcttagaaaacctaacagtgtgagcaggatagtaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tgttggaagtgtatggatgacttaatcttagaaaacctaacagtgtgagcaggatagtaa 319
Query: 121 cacactcagaaaaacggtcatcttcagtaagtacagcaatggttcactcaccacagaact 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 320 cacactcagaaaaacggtcatcttcagtaagtacagcaatggctcactcaccacagaact 379
Query: 181 tcacagtattccaggtatgagaaggaatttctttaacaaaaaaaaagtgacacagatgct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tcacagtattccaggtatgagaaggaatttctttaacaaaaaaaaagtgacacagatgct 439
Query: 241 tcacaaaacccctgcaggaaaagggaacacactggcgcctgagccctagccatcagccac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tcacaaaacccctgcaggaaaagggaacacactggcgcctgagccctagccatcagccac 499
Query: 301 aggactttcaaacatgactgctctgtactgcaccaagctgaggatgcggccacgagagta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aggactttcaaacatgactgctctgtactgcaccaagctgaggatgcggccacgagagta 559
Query: 361 aagga---caaaggaacaaaagtagcataaaatctgggaggaaaaatgtttacagcatat 417
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 560 aaggaggacaaaggaacaaaagtagcataacatctgggaggaaaaatgtttacagcatat 619
Query: 418 aggatcgccta 428
|||||||||||
Sbjct: 620 aggatcgccta 630
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 830
Length adjustment: 9
Effective length of query: 419
Effective length of database: 821
Effective search space: 343999
Effective search space used: 343999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
