XXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAATTCAATCAC
AATGTCACTTCTTTCCAAACTTCAATTCTCCCATGAAAATTTTTTATAAT
AGATGAGATAAGAACTTAATTTGAAAATCATTGTTCCATGGAAAGTTATT
AAATCAACAAGAACATCAGTTCTATTCTTCAGTGAATTTTAGTTCTTATC
GTTGCTCACACCATATTTATTTTTGCCTGATTTGAGCTATGGTGAAAAAA
GGAAAGCATAAATCCAAGTGGCCAGAACACAAATGGAGGGATATGTGGAA
CCGATTTCAATAACTTTTAATCTAAAGTTTACACCAGTTTGTGTTTTTAT
GAAACATTCTGAGGAAAAGATGAAGAACACCCCTAGTCTTTCTGCTCATG
ATTTCCTATGTACATTCATAATTAAGGGAGACACTCAGAAAACTGTGGGT
GAGTTAGTACCTGAGGCACATATGGGTGAAAGGCAAATTCTGACAGCACA
GCAGGCTTTCTTCTCTGATCCAGACATTCACATTGCCCTTTCCCCCTTCT
TCATCCTTGTCTGGCACAATAAGTAAGTATAGATGTGAATAAAAATATCA
TGCAAAAAACCTAGGGTAGCAAAAACTCTTCTCAAGGATAAAAGAACCTC
TGGTGGAATCGCCATGCCTGACCTAAAGCTGTACTACAGAGCAATTGTGA
TCAAAACTGCATGGTACTGGGA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAGAGTCCACCCTCAATAGATAGACAACCTCAAGAG
GAGAGATGGGGTTACCAACCCATACTCAAAATATCTGACCCAGAAGGGTA
CCTGTCTAAAAGAACTGCAGGAGCAAAAATGGTGAAGAGGCTGAGAGAAA
GGAGTTACAGTGACCAGCCCAACTTTGGGATCCCATCCNCCANAGGGGGG
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTNNNNNNNNNNNNNNNCNNNNNNNNNNNNNCNTNNNNNN
NNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNCNNNNNTNNNNNNNNNNNNNTNNNNN
TGNGGNNNTTTGGGTTGTTNNNNCCCCTGNTTTTTNNNTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTGTTTTTGGGCTTTTTTTTTTGCTTTCTTTTTGC
GTTTCTCGTCCCCTCTTCTGTGCTTCTGCTTTCCCTCCTTTTCCGTTCTT
TTTCTCCTCTCTCCTTTTTCCCTTCTTCCGTTTTTTTTCTTTTCTTTTTT
CCCCTTTCGCCTTCGTTTCCCGTTTGTTTGCGCCCGCCCGTGGGGTTTGT
TGTTGTTTTTTGTGGTTTTTTCCGGCGTGTCTCCCCCCCTCTT

Query= MSMg01no358_i01.b1 MSMg01no358_i01.b1 CHROMAT_FILE:
MSMg01no358_i01.b1 PHD_FILE: MSMg01no358_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:47 2005
         (615 letters)



>mm_chr9_79032846_79033861
          Length = 1016

 Score = 1152 bits (596), Expect = 0.0
 Identities = 611/616 (99%), Gaps = 1/616 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttctttccaaacttcaattctcccatgaaaa-ttttttataatagatgagataagaact 59
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 cttctttccaaacttcaattctcccatgaaaatttttttataatagatgagataagaact 260

                                                                       
Query: 60  taatttgaaaatcattgttccatggaaagttattaaatcaacaagaacatcagttctatt 119
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatttgaaaatcattgttccatggaaagttattaaatcaacaagaacatcagttctatt 320

                                                                       
Query: 120 cttcagtgaattttagttcttatcgttgctcacaccatatttatttttgcctgatttgag 179
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttcagtgaattttcgttcttatcgttgctcacaccatatttatttttgcctgatttgag 380

                                                                       
Query: 180 ctatggtgaaaaaaggaaagcataaatccaagtggccagaacacaaatggagggatatgt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctatggtgaaaaaaggaaagcataaatccaagtggccagaacacaaatggagggatatgt 440

                                                                       
Query: 240 ggaaccgatttcaataacttttaatctaaagtttacaccagtttgtgtttttatgaaaca 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaaccgatttcaataacttttaatctaaagtttacaccagtttgtgtttttatgaaaca 500

                                                                       
Query: 300 ttctgaggaaaagatgaagaacacccctagtctttctgctcatgatttcctatgtacatt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttctgaggaaaagatgaagaacacccctagtctttctgctcatgatttcctatgtacatt 560

                                                                       
Query: 360 cataattaagggagacactcagaaaactgtgggtgagttagtacctgaggcacatatggg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cataattaagggagacactcagaaaactgtgggtgagttagtacctgaggcacatatggg 620

                                                                       
Query: 420 tgaaaggcaaattctgacagcacagcaggctttcttctctgatccagacattcacattgc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgaaaggcaaattctgacagcacagcaggctttcttctctgatccagacattcacattgc 680

                                                                       
Query: 480 cctttcccccttcttcatccttgtctggcacaataagtaagtatagatgtgaataaaaat 539
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctttcccccttcttcatccttgtctggcacaataagtaagtatagatgtgaataaaaat 740

                                                                       
Query: 540 atcatgcaaaaaacctagggtagcaaaaactcttctcaaggataaaagaacctctggtgg 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atcatgcaaaaaacctagggtagcaaaaactcttctcaaggataaaagaacctctggtgg 800

                           
Query: 600 aatcgccatgcctgac 615
           ||| ||||||||||||
Sbjct: 801 aattgccatgcctgac 816


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1016
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1006
Effective search space:   608630
Effective search space used:   608630
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)