BAC Information

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BAC

Clone NameMSMg01-358O10
Chromosome9 (Build37)
Map Location 38,411,110 - 38,411,477
singlet/doubletsinglet
Overlap genenone
Upstream geneSpa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875, Olfr876, Olfr877, Olfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900, Olfr147, Olfr901, Olfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913
Downstream geneOlfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358O10.T7 (MSMg01no358_o10.b1)MSMg01-358O10.TJ (MSMg01no358_o10.g1)
ACCAG468446AG468447
length721739
length of high quality
(start - end)		376 (34 - 409)343 (66 - 408)
definitionCHROMAT_FILE: MSMg01no358_o10.b1 PHD_FILE: MSMg01no358_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:17 2005CHROMAT_FILE: MSMg01no358_o10.g1 PHD_FILE: MSMg01no358_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCGCTATACGACTCACTATATCCAGAGGATCCGCGGAATTCCATGTC
ATTCCGGCATGACCAATAATGTTCTGGGTAAACTGAGCTACCTAGAGAAA
CCAAGTATTAAAAATCCAGTGCTCCCCAAAAAGTGGAGAGAAAAAATAAA
TTAAATATTGAATCAAAGTATAGTTCCCCTACACTGTATGAAGAACTGTC
AACCTTTTTCTGCAAAGCCAGATGGTATGTATTTTATGTATGCAGGGCTC
TATTGCATGCAAACTCTGTTACTGTCAAATAGTAAATGTCTACCACATTT
TATTTGTAGGTATTAAGTGTTTTCTGCAGCTGTATAGTTGTTTTGTATCA
CAGATGTAGCGTGGGGTTCAATGAATAACACCAAGTTCTGGAGGAGGGTA
AGGAAACACCCAATGTAATCAGCCAGTGATATAATTATATTTATATTAAC
AATTTTACTTATGTTTAAATTTCATATGTATGGGTGTGAGTGAGTATGTA
GTGTATACATGTTTGCTGTATAGACCTGTGTAATTGCATTTATGCCTAAG
GCCTGTCCTGCTCTCTTATTACCCATCCTTATTCTTTGAGACTCGTCATC
TATTTATCCATGGCAGCTAGGTTGGTTGCCTAGTCTCCATAATTTTTGAG
GCAAATAAAAACCATTATGACCCCATTCGTGCTTTTCATTTTAGGTTATG
TTTTACTCTAACTTTCATTGA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTAATCTTTCCAAGACTTTTGTCATGAATAGTTGC
TGGATTTTCTCAAATGCTTTCTCAGCATCTAACAAGATGATCATGTGGTT
TTTGTCTTTGAGTTTGTTTATATAAAGGATTATGTTGATGGATTTCCGTA
TATTAAACCATCCCTGCATCCCTGGAATTAAACCTACTTGGTCAGGATGG
ATGATTGTTTTGATGTGTTCTTGGATTCGGTTAGGGAGAATTTTATTGAG
AATTTTTGCATCTATATTCATAAGGAAATTGGTCTGAAATTCTCTTTCTT
TGTTGGCTCTCTCTGTGGTTTAAGTATAGAGTAATTGTGGATTCATAGAA
CAAGTTGCCCCCCACCCCCTTCTGCTTCTATTTTGTGGAGTAGTTTGAGG
AGCATTGCAATTAGCACAGAGATAGTGTGTATTTAACTATAGGATTTTTG
TGTTGATATTTTTCCTCATTTTATTCCTTAATATTTATTGTATTTTTAAA
TCTCATTTTCTTTTGACTTATTTACGTTCTTACATTGATCTATTGTTATA
TTTTCTCCAACTTTTATTTTTGCTTCTACTTATTTTATTTCATTTATTAT
TTTTTTCTGTTTCTTATTTATTTTCTTATTTATTCTTTTTTTCTTTGCCA
CTTCTTGTTTATATATTTTACTATCTTTTTTCTCATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_o10.b1 MSMg01no358_o10.b1 CHROMAT_FILE:
MSMg01no358_o10.b1 PHD_FILE: MSMg01no358_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:17 2005
         (376 letters)



>mm_chr9_38410905_38411680
          Length = 776

 Score =  675 bits (349), Expect = 0.0
 Identities = 364/369 (98%), Gaps = 2/369 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattccatgtcattcc-ggcatgaccaataatgttctgggtaaactgagctacctagag 64
           |||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 gaattccatgtca-gcctggcatgaccaataatgttctgggtaaactgagctacctagag 515

                                                                       
Query: 65  aaaccaagtattaaaaatccagtgctccccaaaaagtggagagaaaaaataaattaaata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 aaaccaagtattaaaaatccagtgctccccaaaaagtggagagaaaaaataaattaaata 455

                                                                       
Query: 125 ttgaatcaaagtatagttcccctacactgtatgaagaactgtcaacctttttctgcaaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ttgaatcaaagtatagttcccctacactgtatgaagaactgtcaacctttttctgcaaag 395

                                                                       
Query: 185 ccagatggtatgtattttatgtatgcagggctctattgcatgcaaactctgttactgtca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ccagatggtatgtattttatgtatgcagggctctattgcatgcaaactctgttactgtca 335

                                                                       
Query: 245 aatagtaaatgtctaccacattttatttgtaggtattaagtgttttctgcagctgtatag 304
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 334 aatagtaaatgtctaccacattttatttgtaggtatttagtgttttctgcagctgtatag 275

                                                                       
Query: 305 ttgttttgtatcacagatgtagcgtggggttcaatgaataacaccaagttctggaggagg 364
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 274 ttgttttgtatcacagatgtagcgtggggtttaatgaataacaccaagttctggaggagg 215

                    
Query: 365 gtaaggaaa 373
           |||||||||
Sbjct: 214 gtaaggaaa 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space:   281489
Effective search space used:   281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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