BAC Information

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BAC

Clone NameMSMg01-359A01
Chromosome9 (Build37)
Map Location 88,362,148 - 88,362,707
singlet/doubletsinglet
Overlap geneSyncrip
Upstream geneTbx18, LOC671731, LOC100039580, LOC384962, EG272633, Nt5e, Snx14, LOC100039601
Downstream gene2810026P18Rik, 4930422I07Rik, EG547109, LOC100039707, LOC100039721, Bcl2a1d, LOC100039674, EG666731, LOC100039741, Bcl2a1a, LOC100039689, EG666747, LOC100039714, 4930579C12Rik, Bcl2a1b, Mthfs
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359A01.T7 (MSMg01no359_a01.b1)MSMg01-359A01.TJ (MSMg01no359_a01.g1)
ACCAG468523AG468524
length982733
length of high quality
(start - end)
---563 (55 - 617)
definitionCHROMAT_FILE: MSMg01no359_a01.b1 PHD_FILE: MSMg01no359_a01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:24 2005CHROMAT_FILE: MSMg01no359_a01.g1 PHD_FILE: MSMg01no359_a01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACCACCCTAACTCGCGAACTCGCGGCGTCAATATTACCATTACGTACAT
TAATAATCTTTTTTCATCACACTGTCAGAGTTCTAAAACCAATAAGACAC
TCCCAAGAGAAATATTACGCATATACTATACAACAAAAACACGAAACAAT
TTTTGCCACACCTCTACATAAATACTCCATAAACTCCTTACGATCCCTTC
ACACTCCGTTTTTCACTCTTTTCTACTTACGCATTGCGTTCTTTCCGACT
TGGTTTCCCCTTTTCGCCCCCCCTCCCTTTCTTAATTTCTTAACCCATAA
ACCAACCAAATTACCCTAAATTTATCTACATCATTCCATTATACCTTCGT
TAGCTGTTTCTCCCCTTAAATCTTTATTATACTTTACTAAACCCTCGAAA
TTCTTACATACATTTCGCAGTCATTACTTCCATATATATTTATGCAANCC
GGCCCGTTTCCTTTCTCCTTACTCCACCCCTATCACCGNGGNNNCTTCCT
CAAAAAATAAAAAAAATTGGGGGCCGGGGGGCCGGCGGGCTTCTTAAATA
TTAAAAACGGGGAAACAGTGAACAGGCAAAATTTCNAAAGCGGGGGANNA
GGGGAGNGGAAAGNAANTAAGGTTCTTTGGTTCCNAGGNNAANNTNAAAN
NCTTNNCCNNNTCAAAATTGTAGTAACCTGNNNCTGGCCCCAGCGCAATT
NAATANTGCAAANNCCAATNATNNTTATTTAAATCNACNTTCNCNNNNTN
TCGGGGGAGGGGGGAAAANNCATGNNGGGGNCNTCTTTGGCCCCCCCGCG
AGGGTTTNNGGATTTTNNCNTANNNTTCCTTTTTGAAAGGGGGGGGAGGG
CCCNNNAACTNTTTGCNCGGGCTTTCTGTGGGGCGAGAGAGGAGGGGTAT
TTTGTAGAAAAAAANNTCCGTGGGCTTGTTGGGGGTTTTTNTCCCCNAAA
NCAAAAAAAAAAAAAATATTGGGGTAATGACA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTCAGTACAGCATGATGGTATGAAGGATGACCAAAATGTTCATATTT
AGCAAAATGGGATCTCAAAGTTTCAAGATGAAAAAGAATAAATTTCCGAC
AATTCATCAATGTGGGGAGATGGCTCAGGAGGGTAAAGTGCTTGCCAACC
CAACATAGGGCCCAGCGTTCCCATGAATCCACGTAAAGTCATCACAGTAG
CACTATAATAACAGCACATCTACAAAGATAGGAGGCTGAAACAGGACAAT
CCCTGGAAAAAAAATCACTGGCCAGCTAGCCTGGCATACATACATAACTG
CAAACCACAAAGATACCCTAATCTAAATAAGGTCCAAGAAGACTGACCAA
CACCTAAGATTGTGCTTTTACCAGCAGCTAGCTCTGTAAGCACAGTGGCA
CATGAGCAGCTGTGAGCATATGCACGCAGGTACCCACAACACAATATGTC
TAAAGAACACCTGTGCGCGCGCACACACACACACACACACACACACATAC
ACACGACAAAAACTGTCTCTCAATGACCACCTGCACATAGTCTCACACAG
GTAAGACAAAACACACACAAATTTAACAATGTCAGGTTTGAATTGTGATT
CAAGTGGTTACTCGGTCTTACTCTTCTCACAAAGCCTATTTATTTTAAAA
CATTAATTAAAAAGTTTTCTCTGTGCTGAGGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_a01.g1 MSMg01no359_a01.g1 CHROMAT_FILE:
MSMg01no359_a01.g1 PHD_FILE: MSMg01no359_a01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:25 2005
         (563 letters)



>mm_chr9_88361948_88362910
          Length = 963

 Score = 1046 bits (541), Expect = 0.0
 Identities = 557/563 (98%), Gaps = 3/563 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagtacagcatgatggtatgaaggatgaccaaaatgttcatatttagcaaaatgggatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagtacagcatgatggtatgaaggatgaccaaaatgttcatatttagcaaaatgggatc 260

                                                                       
Query: 61  tcaaagtttcaagatgaaaaagaataaatttccgacaattcatcaatgtggggagatggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaaagtttcaagatgaaaaagaataaatttccgacaattcatcaatgtggggagatggc 320

                                                                       
Query: 121 tcaggagggtaaagtgcttgccaacccaacatagggcccagcgttcccatgaatccacgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaggagggtaaagtgcttgccaacccaacatagggcccagcgttcccatgaatccacgt 380

                                                                       
Query: 181 aaagtcatcacagtagcactataataacagcacatctacaaagataggaggctgaaacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagtcatcacagtagcactataataacagcacatctacaaagataggaggctgaaacag 440

                                                                       
Query: 241 gacaatccctggaaaaaaaatcactggccagctagcctggcatacatacataactgcaaa 300
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacaatccctggaaaaaaa-tcactggccagctagcctggcatacatacataactgcaaa 499

                                                                       
Query: 301 ccacaaagataccctaatctaaataaggtccaagaagactgaccaacacctaagattgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ccacaaagataccctaatctaaataaggtccaagaagactgaccaacacctaagattgtg 559

                                                                       
Query: 361 cttttaccagcagctagctctgtaagcacagtggcacatgagcagctgtgagcatatgca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cttttaccagcagctagctctgtaagcacagtggcacatgagcagctgtgagcatatgca 619

                                                                       
Query: 421 cgcaggtacccacaacacaatatgtctaaagaacacctgtgcgcgcgcacacacacacac 480
           |||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||
Sbjct: 620 cgcaggtacccacaacacaatatgtctaaagagcacctgtgcgcgcgcgcgcacacacac 679

                                                                       
Query: 481 acacacacacacatacacacgacaaaaactgtctctcaatgaccacctgcacatagtctc 540
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 acacacacaca--tacacacgacaaaaactgtctctcaatgaccacctgcacatagtctc 737

                                  
Query: 541 acacaggtaagacaaaacacaca 563
           |||||||||||||||||||||||
Sbjct: 738 acacaggtaagacaaaacacaca 760


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)