BAC Information

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BAC

Clone NameMSMg01-359J23
Chromosome9 (Build37)
Map Location 93,623,965 - 93,624,337
singlet/doubletsinglet
Overlap geneLOC674371
Upstream geneLOC100039944, LOC667009, LOC100040114
Downstream geneLOC384967, EG384968, 1190002N15Rik, EG667601, Slc9a9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359J23.T7 (MSMg01no359_j23.b1)MSMg01-359J23.TJ (MSMg01no359_j23.g1)
ACCAG468993AG468994
length759790
length of high quality
(start - end)		439 (23 - 461)375 (53 - 427)
definitionCHROMAT_FILE: MSMg01no359_j23.b1 PHD_FILE: MSMg01no359_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:09 2005CHROMAT_FILE: MSMg01no359_j23.g1 PHD_FILE: MSMg01no359_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTTCAGTTCTGAGCC
CCATTTTTTAATGGGGTTGTTTGATTTTCTGAAGTCCACCTTCTTGAGTT
CTTTATATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAGG
AACCACCAGACTAATTTCCAGACTGTTTATACCAGTTTTCAATCCCACCA
GCAATGGAGGAGTGTTCCTCTCTCTCCACAGCCTCACCGGCATCTGCTGT
CACCTGAATTTTTGATCCTAGCCATTCTGACTGGTGTGAAGTGGAATCTC
AGGGTTGTTTTCATTTGCATTTCCCAGATGTTGAACATTTTTTTCAAGTA
CTTCTCAGATCTTTGGTATTCCTCGGTTGAGAATTCTTTGTTTAGCTCTG
TACCCCATTATTTTAATTAGGTATTTTCTTCATTTACATTTCAAATGTTA
TCCCAAAAGTCTCCCATACTCTCCCCCCACACACACTCCACTAACTTACC
ACTCCCACTTCTTGGGCCTAAATTTCCCCCGTACTGAGGCATGAAAAGTT
TGCCAGACTAACGTTTCTTTTCTTTCTTTGAGAGGCCCCAAAGGCCCCCC
CTGCAATTTTGTTTTTTTAACTTTAACTTTCCGAATCTTGTTGTTCCTGT
GTTCTTCCCCTCCATTTGTCATACCCTTCCTCCCCCTTTATTTTTTTTCT
CCCCCTTTTCTTCCCCTTTTTCCCCCCTTTCTCTTCCACTTTTCTCCCCC
CCTTTTCTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXTTTGGACAGGACAATCTGTTAAATGTTAATTTTCAGTCAATCTGTTGC
AGATATTAGAAGAACCCTACAAAAGCAAACCATGGTGCCCAAGATACTCG
AAATAACCTTTACAAAGCTAGGTCTTATTGAGAGCTCTTTAGTTCTGATC
CATCTTGATCTCTCTGAGGTCTGTGTCTCCAGCAGGGATTCACCTTCAAC
TTCTTGGAGTTCACCCAGTGGCCTATATTCTTTTGGTCCTCTATTTGAGC
TCTAAAACCAACAGATCAAAAAGAGGTATATCATGTCAGATATATTTGTC
ACTGTTGATGGATAGTTTAGAAACAGAATTTTCTCCCTAAGTGACATAAT
CTCATTTTCTCTGTCTCTCTCTTTGTCCCTGTGATATATTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCNNTTT
NNTNNNCTCCTTCTCTTTCTCTCCCCTCTTTCCCTCCTTTTTTTACCTTC
TTTACCNCCCCCCTTTTATTTTCCCCTTNNCACCCTTTCTAAAAAAAATA
ACCACAACTCCCGCCTTCCTTTTCTATTAGAATATATACACACAAATTTT
CTTCCCTTTCACTATTTACACATTTCAATCTTCCTCTTTTTTTTTCTCTC
TACCCCCTTTCTCTTATTTTTTTTTTTTCCCACTCTCTATACACCCCTTT
TTCCTAATTCTTTCTTTTATCCTTTTCTTATCCTCCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_j23.g1 MSMg01no359_j23.g1 CHROMAT_FILE:
MSMg01no359_j23.g1 PHD_FILE: MSMg01no359_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:09 2005
         (375 letters)



>mm_chr9_93623765_93624537
          Length = 773

 Score =  675 bits (349), Expect = 0.0
 Identities = 368/375 (98%), Gaps = 2/375 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttggacaggacaatctgttaaatgttaattttcagtcaatctgttgcagatattagaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tttggacaggacaatctgttaaatgttaattttcagtcaatctgttgcagatattagaag 514

                                                                       
Query: 61  aaccctacaaaagcaaaccatggtgcccaagatactcgaaataacctttacaaagctagg 120
           ||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||
Sbjct: 513 aaccctacaaaagcaaaccatagtgcccaagacactcgaaataacttttacaaagctagg 454

                                                                       
Query: 121 tcttattgagagctctttagttctgatccatcttgatctctctgaggtctgtgtctccag 180
           |||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 453 tcttattgagagctc--tagttctgatccatcttgatctctctgagctctgtgtctccag 396

                                                                       
Query: 181 cagggattcaccttcaacttcttggagttcacccagtggcctatattcttttggtcctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 cagggattcaccttcaacttcttggagttcacccagtggcctatattcttttggtcctct 336

                                                                       
Query: 241 atttgagctctaaaaccaacagatcaaaaagaggtatatcatgtcagatatatttgtcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 atttgagctctaaaaccaacagatcaaaaagaggtatatcatgtcagatatatttgtcac 276

                                                                       
Query: 301 tgttgatggatagtttagaaacagaattttctccctaagtgacataatctcattttctct 360
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tgttgatgcatagtttagaaacagaattttctccctaagtgacataatctcattttctct 216

                          
Query: 361 gtctctctctttgtc 375
           |||||||||||||||
Sbjct: 215 gtctctctctttgtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 773
Length adjustment: 9
Effective length of query: 366
Effective length of database: 764
Effective search space:   279624
Effective search space used:   279624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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