Query= MSMg01no359_p23.b1 MSMg01no359_p23.b1 CHROMAT_FILE:
MSMg01no359_p23.b1 PHD_FILE: MSMg01no359_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:37 2005
(251 letters)
>mm_chr9_61151974_61152624
Length = 651
Score = 464 bits (240), Expect = e-135
Identities = 249/252 (98%), Gaps = 1/252 (0%)
Strand = Plus / Minus
Query: 1 ggtggctcacaaccatctgtaatgggatctgatgcccttttctggtgaagagagcaaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ggtggctcacaaccatctgtaatgggatctgatgcccttttctggtgaagagagcaaaag 492
Query: 61 tctacagtgtgttcgtatacataaaataaatacatc-tttttttaaaatctcataaataa 119
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 491 tctacagtgtgttcgtatacataaaataaatacatctttttttttaaatctcataaataa 432
Query: 120 aagaaactaagtgaactagaaataaaataaattcccatctacccacttttatttgtgtgt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aagaaactaagtgaactagaaataaaataaattcccatctacccacttttatttgtgtgt 372
Query: 180 gtatgtagatacatatcaggggccagaggacaatgataattgccttcctcggtttttctc 239
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 371 gtatgtagatacatatcaggggccagaggacaatgataattgtcttcctcggtttttctc 312
Query: 240 taccttatttct 251
||||||||||||
Sbjct: 311 taccttatttct 300
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space: 155364
Effective search space used: 155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no359_p23.g1 MSMg01no359_p23.g1 CHROMAT_FILE:
MSMg01no359_p23.g1 PHD_FILE: MSMg01no359_p23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:37 2005
(330 letters)
>mm_chr9_60974491_60975215
Length = 725
Score = 526 bits (272), Expect = e-154
Identities = 317/340 (93%), Gaps = 15/340 (4%)
Strand = Plus / Plus
Query: 1 acctgaatgtgcacccaaatgca----------acacacacacacacacacacacacaca 50
||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 191 acctgaatgtgcacccagatgcaccacacacacacacacacacacacacacacacacaca 250
Query: 51 cacacacacagctagctggtctgacagtgcctacctgtaataccagcacctgagaagaca 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 cacacacacagctagctggtctgacagtgcctacctgtaataccagcacctgagaagaca 310
Query: 111 gcgaggccagcttggggcacattttgagatcctgtcttcaaaataagagaggagaggaaa 170
||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 311 gcgaggccagcgtggggcacattttgagatcctgtctccaaagtaagagaggagaggaaa 370
Query: 171 gaaaggaaaaaagcacaacccctcaaagaattcttttttcagataaagtatgttgaagtg 230
|||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 371 gaaaggaaaa--gcacaacccctcagagaattcttttttcagataaagtatgctgaagtg 428
Query: 231 gtgggaaggaagaggtgctcatcttcctaagtgactccagtcaccttctttttttttaat 290
||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||
Sbjct: 429 gtgggaaggaagaggtgctcaccttcctaagtgactccagtcacctt---ttttttaaat 485
Query: 291 tttctctcttcttcctgtggtgaaaagaagactcctacag 330
||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tttctctcttcttcctgtggtgaaaagaagactcctacag 525
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 87
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 725
Length adjustment: 9
Effective length of query: 321
Effective length of database: 716
Effective search space: 229836
Effective search space used: 229836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
