BAC Information

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BAC

Clone NameMSMg01-360G07
Chromosome9 (Build37)
Map Location 13,531,844 - 13,703,231
singlet/doubletdoublet
Overlap geneMtmr2, Cep57, 2810485I05Rik, LOC665329
Upstream geneLOC100039680, LOC665285, LOC100039729, LOC100039758, Maml2
Downstream geneSesn3, Endod1, LOC665351, EG547035, Jmjd2d, 0610040D20Rik, Amotl1, EG665374, Piwil4, Fut4, 1700012B09Rik, Ankrd49, Mre11a, LOC100040259, Gpr83, Folr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360G07.T7 (MSMg01no360_g07.b1)MSMg01-360G07.TJ (MSMg01no360_g07.g1)
ACCAG469579AG469580
length750787
length of high quality
(start - end)
244 (71 - 314)368 (73 - 440)
definitionCHROMAT_FILE: MSMg01no360_g07.b1 PHD_FILE: MSMg01no360_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:07 2005CHROMAT_FILE: MSMg01no360_g07.g1 PHD_FILE: MSMg01no360_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,531,844 - 13,532,087)(13,702,892 - 13,703,231)
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGCAAGAGAATCCGCGGAA
TTCCTCCTCTTACATCATCTGCAGTGCCTCTGAGGTAGTCTCCCTCTTAG
GTTTCTTAAGGAGAATCACAGTGGAGGTTTTGCTCACAGACCATTCCATT
TCTTAACCTGGTTGTAAATGTAATGGCCTGTTTCAATTGACCACTTGGTT
ACACTAAGAAATGCCTAGAGCATAAGTGAAGGACACCTCTGGACATGGTC
TGTGAAGGAGGAGAAAAGACTTGCATGGAACTCAGACTGGATAGAAGAGG
AGAACAGAGAGAGATCTCTGATTTCTGACATTCCCATCTCTATTTCCTGA
CCATGGTGATGTGGGAAAGCAGATTCCAAGTGCCACATACAAGATCAAGT
GTACTGCTGTGCCTCCTCTGCCATGATGGACCACAAGTTAAGACAACCAT
TGCTTCCTATCAGGTAACTGGTCACAACAACTAACACAGTATACTCCACT
ATACTATACTATTCCTTATATTGCATCCATATCTCTATCTATTTGGTATA
TATGCTTAATATTTATTTATACATATATTGTTCATGCTCTATGTATTTCA
AAATTTATAACTTATTTTTTGTTTTCCCCACCTTTCTTCGCTCCATATCA
TGTTGAGTATTTATCATCCTAAATTTTTAATGCTTCTTCCTTTTCATTTA
ATAAATGCACATGCAGATCTACTCGTTTTTTTCTCGCCCACCCCCCTTTT

ATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGTGCGCGCGCGCGCGCGCGCGCACGCA
CGCACACACACACACACACACACACACACACACACACACACACACACACA
CACCGCTTAGCAGCTGAATACAACACAGAACGTGTCTATTTTTGACCGCT
ATAAAGACTAACCAGCAGGCCTGCAAATTCATGCCTCAGCAATCACTGTC
AAGCCCGTTGCTTAGGAACACAGAGGTTTCCAAAATGGTCTTGTCCATCT
CTCCTCTGCGCATGCACCGTCTCCCTACCAGGAAGTGTCTGTCGTGTTAT
ATCAGGAGCCCACAATGAGCAGGACATACCCCCATAGGTGATCCAGTCTA
GAAGGGACAACAGCAGGGGAGATGGTGATTATGATGCAGCACAGGTGTTA
GACTACTGCTAGATAACATCTGTGTAATGCATTAGTGACCTTCTCTTGTC
TTCTACTAAGGAACTGTTTGCTCAAGGGAAGGCTTCGCTGTAACTCAAAA
GCAAAGCTTCGCTTTTGCCAGTTATTATTTTGAAACCCCCATGTTATACT
AACCCCCTTGAATGTGTTCCGCCCAACCTTGTTACACCAAATACCGCCTT
TTCTTAAAATCGCTCACTATATCTACAAAGCCCCATCATGCTTTCCTATT
CTGCTGCGCGTCCTTTTTCCCTTTCATCTTCCTTTTCTCTTACAATTATT
CCTTTCCCTTTTTATCCTCTGCTATTATCCTCTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_g07.b1 MSMg01no360_g07.b1 CHROMAT_FILE:
MSMg01no360_g07.b1 PHD_FILE: MSMg01no360_g07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:07 2005
         (244 letters)



>mm_chr9_13531644_13532287
          Length = 644

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcagtgcctctgaggtagtctccctcttaggtttcttaaggagaatcacagtggaggttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcagtgcctctgaggtagtctccctcttaggtttcttaaggagaatcacagtggaggttt 260

                                                                       
Query: 61  tgctcacagaccattccatttcttaacctggttgtaaatgtaatggcctgtttcaattga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgctcacagaccattccatttcttaacctggttgtaaatgtaatggcctgtttcaattga 320

                                                                       
Query: 121 ccacttggttacactaagaaatgcctagagcataagtgaaggacacctctggacatggtc 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 ccacttggttacactaagaaatgcctagggcataagtgaaggacacctctggacatggtc 380

                                                                       
Query: 181 tgtgaaggaggagaaaagacttgcatggaactcagactggatagaagaggagaacagaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgaaggaggagaaaagacttgcatggaactcagactggatagaagaggagaacagaga 440

               
Query: 241 gaga 244
           ||||
Sbjct: 441 gaga 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no360_g07.g1 MSMg01no360_g07.g1 CHROMAT_FILE:
MSMg01no360_g07.g1 PHD_FILE: MSMg01no360_g07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:08 2005
         (368 letters)



>mm_chr9_13702610_13703376
          Length = 767

 Score =  617 bits (319), Expect = 0.0
 Identities = 335/341 (98%), Gaps = 3/341 (0%)
 Strand = Plus / Minus

                                                                       
Query: 30  gcacacacacacacacacacacacacacacacacacacacac--acacacacaccgctta 87
           ||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||
Sbjct: 622 gcacacacacacacacacacacacacacacacacacacacacatacacacacactgctta 563

                                                                       
Query: 88  gcagctgaatacaacacagaacgtgtctatttttgaccgctataaagactaaccagcagg 147
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 562 gcagctgaatacaacacagaacgtgtctatttttgaccgctataaagactagccagcagg 503

                                                                       
Query: 148 cctgcaaattcatgcctcagcaatcactgtcaagcccgttgcttaggaacacagaggttt 207
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cctgcaaattcatgcctcagcaatcactgtcaagcccgttgcttaggaacacagaggttt 443

                                                                       
Query: 208 ccaaaatggtcttgtccatctctcctctgcgcatgcaccgtctccctaccaggaagtgtc 267
           ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 442 ccaaaatggtcttgtccatctctcctctgcgcatgcaccg-atccctaccaggaagtgtc 384

                                                                       
Query: 268 tgtcgtgttatatcaggagcccacaatgagcaggacatacccccataggtgatccagtct 327
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgtcgtgttatatcaggagcccacaatgagcaggacatacccccataggtgatccagtct 324

                                                    
Query: 328 agaagggacaacagcaggggagatggtgattatgatgcagc 368
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agaagggacaacagcaggggagatggtgattatgatgcagc 283


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 21
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 767
Length adjustment: 9
Effective length of query: 359
Effective length of database: 758
Effective search space:   272122
Effective search space used:   272122
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)