BAC Information

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BAC

Clone NameMSMg01-360G16
Chromosome9 (Build37)
Map Location 44,640,587 - 44,640,977
singlet/doubletsinglet
Overlap geneMll1
Upstream geneLOC100042548, Thy1, Usp2, Mfrp, Rnf26, LOC100042569, Mcam, Cbl, BC038167, Pdzd3, Nlrx1, Abcg4, Mizf, Tmem24, Dpagt1, H2afx, Hmbs, Vps11, LOC100043172, Hyou1, LOC100043178, Slc37a4, Trappc4, Rps25, Ccdc84, Foxr1, Upk2, Bcl9l, Blr1, Ddx6, LOC667406, LOC100042660, Treh, Phldb1, Arcn1, 1500035H01Rik, Tmem25, BC021608
Downstream geneAtp5l, Ube4a, Cd3g, Cd3d, Cd3e, Eva1, A530065I17Rik, Amica1, Scn2b, Scn4b, Tmprss4, Il10ra, Tmprss13, Fxyd6, Fxyd2, Dscaml1, Cep164
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360G16.T7 (MSMg01no360_g16.b1)MSMg01-360G16.TJ (MSMg01no360_g16.g1)
ACCAG469597AG469598
length754780
length of high quality
(start - end)		507 (44 - 550)395 (74 - 468)
definitionCHROMAT_FILE: MSMg01no360_g16.b1 PHD_FILE: MSMg01no360_g16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:09 2005CHROMAT_FILE: MSMg01no360_g16.g1 PHD_FILE: MSMg01no360_g16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTACTTGACCAATATGAGCTCTTAACCACTAAGCCACCTCTCCAGT
CTCTAAGGGTTTCCTTTTAGGAAATAACTAAAACTTTGTTGGTTGTTTTG
TTTTGTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTCAAACTTA
ATTTGTGAACTAGGCAGGCTTCAAATTCAGAGATTTACCGGCCTCTGCCT
CCCAGTTACTTTTATAAAAAGCATATGCTACCACTGTCTGGCCCTAAAAT
ACGTCTTTAATTAACTATTTTACTGAGGGTGGATTAGTAGGTAAATTGCT
TGCATAGCACATACAAAGCCTTGATTATTTCCCCACCAAACAAATTGGAG
TTAGTGACACACACCTATAATTCCAGCACTGGGGAAGTGAAAGTTAGAGG
ATCAAAAGTCAAGGTTATCCTCGCCTACATAATGAGTTCAAGGCCAGCCT
GTGGCACATGATAACCCTGTTTTAACAAAATAAGGAATCAAAGAACAGAA
ACACTGTGGTAGAAAATGAAGAGTAGGGCTGTTGAGATGGCTCAGTGGGT
AAGAGCACCCGACTGCTCTTCCGAAGGTCCAGAGATCAATTCCACCATCC
CTTGTTGGGTTACATACTCCCTAATGAAATCTGAAGCCCTCTTCTTGAGT
GGCTGAAAAAAGTATACGGGACTTACTATATTCATTATATACATCTTTTA
ATTA

AATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCGGACTACGAGTCACTTGCTGCGCTA
CCGTCAGGTGGGCAGAGGGTCTGTCTGTGCAGGGTGCTCGGTGGCTTCAC
CTCAGCATGAAGCGAGGTGCTTCTGTTGCTTGCTCACCTTTGCTTCACTC
TTCATTTACTTCCTAGAGTTTCTTCTCTTCGTCAGAGCGTTAGGACATTC
TTTAGAGCTAAGAGTAGGACCTTGGGGTTGGAGGGGATTGCTCAGTGGTT
AAGAACAAACATTTCCTGCTTTTACAGAGGACCCAGGTTTGATTCTCAGC
TCACAGCAGTCTGTAACTTCAGTTCCAGAGGATCTGTACCCTAGCCAACA
TTCCCGGGCACCAAGCCAAAAGGTGTTTGGTCTGGGTGTGCGGGAATACG
CTTGTCATTCCAGCTCTTGGGTGGTATAAGCAAGACTCTGGCTGTGAGTT
TGGTTCTTACCTAGTGATTTCCCATCTTTAAAGGAAACACAATTTGGAAA
TTTGTAGTTTCTGGTGCCATTAAGGCAGCGTGTATTTTTTGAACCTCCTT
TTTCCTACAACCCCCTGCACTTGCCGGTTCTTTTCTATACCACTTCTTCA
ACTCTTCTCTCTTATTCCCCCATCCGCCCACGATAACACAATATCTTACT
AATTTACCCAATTTACCCATTTCCTACTTCCCTTTATCTCTTCCCACATT
TACTTCCTACCCTTCCTTCCCAATTTACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_g16.g1 MSMg01no360_g16.g1 CHROMAT_FILE:
MSMg01no360_g16.g1 PHD_FILE: MSMg01no360_g16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:09 2005
         (395 letters)



>mm_chr9_44640578_44641372
          Length = 795

 Score =  698 bits (361), Expect = 0.0
 Identities = 385/395 (97%), Gaps = 4/395 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcggactacgagtcacttgctgcgctaccgtcaggtgggcagagggtctgtctgtgcagg 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tcggactaccagtcacttgctgcgctaccgtcaggtgggcagagggtctgtctgtgcagg 341

                                                                       
Query: 61  gtgctcggtggcttcacctcagcatgaagcgaggtgcttctgttgcttgctcacctttgc 120
           |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 340 gtgctcggtggcttcacctcggcatgaagcgaggtgcttctgttgcttgttcacctttgc 281

                                                                       
Query: 121 ttcactcttcatttacttcctagagtttcttctcttcgtcagagcgttaggacattcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ttcactcttcatttacttcctagagtttcttctcttcgtcagagcgttaggacattcttt 221

                                                                       
Query: 181 agagctaagagtaggaccttggggttggaggggattgctcagtggttaagaacaaacatt 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||    ||
Sbjct: 220 agagctaagagtaggaccttggggttggagtggattgctcagtggttaagaaca----tt 165

                                                                       
Query: 241 tcctgcttttacagaggacccaggtttgattctcagctcacagcagtctgtaacttcagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 tcctgcttttacagaggacccaggtttgattctcagctcacagcagtctgtaacttcagt 105

                                                                       
Query: 301 tccagaggatctgtaccctagccaacattcccgggcaccaagccaaaaggtgtttggtct 360
           |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 104 tccagaggatctataccctagccaacattcctgggcaccaagccaaaaggtgtttggtct 45

                                              
Query: 361 gggtgtgcgggaatacgcttgtcattccagctctt 395
           |||||||||||||||||||||||||||||||||||
Sbjct: 44  gggtgtgcgggaatacgcttgtcattccagctctt 10


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space:   303396
Effective search space used:   303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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