BAC Information

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BAC

Clone NameMSMg01-360M02
Chromosome9 (Build37)
Map Location 36,926,232 - 36,926,678
singlet/doubletsinglet
Overlap genePknox2
Upstream geneEG546123, LOC100041618, LOC100042485, EG639025, LOC671003, EG434396, A630095E13Rik, Acrv1, Chek1, Stt3a, Ei24, LOC627681, Fez1, LOC100042545
Downstream gene1810021J13Rik, Slc37a2, LOC100042561, Ccdc15, Hepacam, Robo4, Robo3, BC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875, Olfr876, Olfr877, Olfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888, Olfr889
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360M02.T7 (MSMg01no360_m02.b1)MSMg01-360M02.TJ (MSMg01no360_m02.g1)
ACCAG469855AG469856
length758751
length of high quality
(start - end)
431 (33 - 463)450 (74 - 523)
definitionCHROMAT_FILE: MSMg01no360_m02.b1 PHD_FILE: MSMg01no360_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:35 2005CHROMAT_FILE: MSMg01no360_m02.g1 PHD_FILE: MSMg01no360_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGA
ATTCAACTGTTTTTACAGTGCTTGTCCCATTATGGTAATGCTGGTCCACA
TCACACTGAGTTTCCCCTGAGTTACTAAAGCAGCCTCCTATTTGTTTTCC
TTGCTTCTGTTTATGTGCAACTCCTACATTGCTTCAGAATTAGAAAGATC
GTCCTGCCATGCCACTCCTGCACAAACTCTCCTTTGTCTATGGATTTTTC
TCAGAAAAGGCTTGTCCGTCCAGTGTCATGCAGGACATGACAGTGTGATT
TTAGGCTGATCTGAGGCTTTTCTCCTGCCTCTTTCCTCTCTGCTCTGATT
AGCCACGCTGACTTGTTCTAACTTGGGCACTCCAAGGACAATTTTGCTTT
AAGGATATTTCATATGCTGTTACCTTTGATAATATTTGGCTTGCGTCCTT
CATCTTTGGTCAAATGTAGTTTATCATGAGGCCTCCCTAATGAACTAAAG
TGCCCCTTCTTACTCACCCGTGACACACGTGCTCTACATTCTCTCTTTAA
ATGTTCCCTTTATGCTTCTTATCTTGTGGCTTGTAGTATTTAACATTCGT
TTAGCATTTTTCTCCTTTATTCCCTCTCCTTTTTTTCTATCTTTTCTTTT
TTTTTCATTTTACACTTATCCCTTCTATTTTATTTCATTCTAATTCTTCT
AATTATCTTTCTTAATCCTCTTATACCCATTTCCTACTCTCTCCATTTAT
ATTTTTTT
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTGGATGATGCGCCACAGCTGGAGCA
CCATCCGCCAAGAGCCGCTTTGTGTCAAATTCTCTTGAGAGAATTTTATC
CGAGTGTCAAAATGACCCAAACACATTCAGAACCTTGATATCCAGAATCA
ATTCTGGACTTTGGAGAGACTATCAAGTGTCACTTGCTATCAAGAGGAGT
CTTTTACCAGGTGTTTCCAAATGAGGTTCTTACCTACAAAAACTTGCTTT
TCATTGTTGTGAATGGTGAGTCAACCTACTGAACTGTCTGCTCTCCGACC
TCTTTAGAGAGGTACTAGACTTCAGTACCTGGCCAGTCTCTCGGTTCTAG
TGGTTCTTTAGAACCACTCTGGAGTCTTTTCTCCTTTGCAGTCTCATTAT
CCTAATCCAGGTCTCAGCATCTGATGTGGATAGAATGTGTCTGTCTGTGG
TGGTTAATGCTAATTGACAATTTGGCAAAGCCTAGCTTCTCCTGTACCTG
CCTGTGGAACATTATCTTGTTTACCTTGATTGATGTATGAGGACCCACCC
ACTGGTTGATAAATATTGTTCCTTGCAAACGTGTGCCTTGTCCCGCAAAC
TGCACATTTTGCATATTCCTTGCTTCTTGCCCTGTTTTTGCCTTTCCTTT
TTTGCTTTACCTATCCGCCGTCTTGCCGTTTCCTCCCTTCCGTATGTCCT
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_m02.g1 MSMg01no360_m02.g1 CHROMAT_FILE:
MSMg01no360_m02.g1 PHD_FILE: MSMg01no360_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:35 2005
         (450 letters)



>mm_chr9_36926029_36926878
          Length = 850

 Score =  818 bits (423), Expect = 0.0
 Identities = 441/447 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggatgatgcgccacagctggagcaccatccgccaagagccgctttgtgtcaaattctctt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggatgatgcgccacagctggagcaccatccgccaagagccgctttgtgtcaaattctctt 263

                                                                       
Query: 64  gagagaattttatccgagtgtcaaaatgacccaaacacattcagaaccttgatatccaga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gagagaattttatccgagtgtcaaaatgacccaaacacattcagaaccttgatatccaga 323

                                                                       
Query: 124 atcaattctggactttggagagactatcaagtgtcacttgctatcaagaggagtctttta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atcaattctggactttggagagactatcaagtgtcacttgctatcaagaggagtctttta 383

                                                                       
Query: 184 ccaggtgtttccaaatgaggttcttacctacaaaaacttgcttttcattgttgtgaatgg 243
           | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctaggtgtttccaaatgaggctcttacctacaaaaacttgcttttcattgttgtgaatgg 443

                                                                       
Query: 244 tgagtcaacctactgaactgtctgctctccgacctctttagagaggtactagacttcagt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgagtcaacctactgaactgtctgctctccgacctctttagagaggtactagacttcagt 503

                                                                       
Query: 304 acctggccagtctctcggttctagtggttctttagaaccactctggagtcttttctcctt 363
           ||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 504 acctggccagtctctgggttctagtggttctttagaacaactctggagccttttctcctt 563

                                                                       
Query: 364 tgcagtctcattatcctaatccaggtctcagcatctgatgtggatagaatgtgtctgtct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgcagtctcattatcctaatccaggtctcagcatctgatgtggatagaatgtgtctgtct 623

                                      
Query: 424 gtggtggttaatgctaattgacaattt 450
           ||||||| |||||||||||||||||||
Sbjct: 624 gtggtggctaatgctaattgacaattt 650


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)