Query= MSMg01no360_m06.b1 MSMg01no360_m06.b1 CHROMAT_FILE:
MSMg01no360_m06.b1 PHD_FILE: MSMg01no360_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:36 2005
(378 letters)
>mm_chr9_53800712_53801489
Length = 778
Score = 648 bits (335), Expect = 0.0
Identities = 367/385 (95%), Gaps = 14/385 (3%)
Strand = Plus / Plus
Query: 1 tagcttgaatctacaactgactgtctggtagctttagtcaagctgcttagtctgtctagg 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagcttgaacctacaactgactgtctggtagctttagtcaagctgcttagtctgtctagg 260
Query: 61 gttcagtgggaggggtagttatatctaccttccaagcattggatagaccaaagcatctaa 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttcagtgggaggagtagttatatctaccttccaagcattggatagaccaaagcatctaa 320
Query: 121 gttcttagtatccttaaggtgcatagtgggcacccagagcccgagcacccatggctccat 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 gttcttagtatccttaaggtgcatagtgggcacccagagcccgagcacccatggttccat 380
Query: 181 tactttgccattatcattatatcttcatctaaagtaaaaggtcattttgcttgcacttaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tactttgccattatcattatatcttcatctaaagtaaaaggtcattttgcttgcacttaa 440
Query: 241 gaaattgga----t---tttttttttctggccagcttttgtgacctgaattggcacagtg 293
||||||||| | || ||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaattggaaaaataaatt-------ctggccagcttttgtgacctgaattggcacagtg 493
Query: 294 gtggtggcatgagcgaaaagcaaatgggtgatgaatatttaccaagagtaaataaccggg 353
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 494 gtggtggcatgagcgaaaagcaaatgggtgatgaatatttaccaagaggaaataaccggg 553
Query: 354 ttcacttgttgggtagaaaaaagtg 378
|||||||||||||||||||||||||
Sbjct: 554 ttcacttgttgggtagaaaaaagtg 578
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space: 283761
Effective search space used: 283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_m06.g1 MSMg01no360_m06.g1 CHROMAT_FILE:
MSMg01no360_m06.g1 PHD_FILE: MSMg01no360_m06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:36 2005
(446 letters)
>mm_chr9_54036568_54037414
Length = 847
Score = 812 bits (420), Expect = 0.0
Identities = 429/432 (99%), Gaps = 1/432 (0%)
Strand = Plus / Minus
Query: 1 agtgatctactgcctttgcctcctaagtgctggaatttaaagctttataccaccactgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 agtgatctactgcctttgcctcctaagtgctggaatttaaagctttataccaccactgct 373
Query: 61 gctgcctggctaaatacacagactcttaatccatatattgtctagcaagcttcatttctc 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 372 gctgcctggctaaatacacagactcttaatccacatattgtctagcaagcttcatttctc 313
Query: 121 aatatatacaaatctccattgtcatatctttttaaataaat-ttttcattttggccaggt 179
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 312 aatatatacaaatctccattgtcatatctttttaaataaatgttttcattttggccaggt 253
Query: 180 atggtgacacacacctttaatctcaacatttgggaggcagaggcaggcagatctctgtga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 atggtgacacacacctttaatctcaacatttgggaggcagaggcaggcagatctctgtga 193
Query: 240 gttcgaggtcaccctggtctacatagcaagttccaggccaaccaggtgctacatagtaag 299
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 gttcgaggccaccctggtctacatagcaagttccaggccaaccaggtgctacatagtaag 133
Query: 300 acccatctcaaaatgtttttattttgataatttttatgttttatggtagggaaatactat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 acccatctcaaaatgtttttattttgataatttttatgttttatggtagggaaatactat 73
Query: 360 actagtaggggaatagtgcctcccaaatataagccatttatagtattgccattgtgtttc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 actagtaggggaatagtgcctcccaaatataagccatttatagtattgccattgtgtttc 13
Query: 420 atggagtttgac 431
||||||||||||
Sbjct: 12 atggagtttgac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 847
Length adjustment: 10
Effective length of query: 436
Effective length of database: 837
Effective search space: 364932
Effective search space used: 364932
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
