BAC Information

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BAC

Clone NameMSMg01-361F01
Chromosome9 (Build37)
Map Location 106,899,138 - 106,899,702
singlet/doubletsinglet
Overlap geneDock3
Upstream gene1110001D15Rik, LOC669311, 6230410P16Rik, Wdr82, Ppm1m, Twf2, Tlr9, Alas1, Wdr51a, Dusp7, Rpl29, Acy1, Abhd14a, Abhd14b, Pcbp4, Parp3, Rrp9, Iqcf1, Iqcf5, Iqcf3, Iqcf4, LOC100041096, Grm2, Tex264, Rad54l2, LOC100041128, Vprbp, Armet
Downstream geneMapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361F01.T7 (MSMg01no361_f01.b1)MSMg01-361F01.TJ (MSMg01no361_f01.g1)
ACCAG470278AG470279
length824754
length of high quality
(start - end)
252 (49 - 300)565 (80 - 644)
definitionCHROMAT_FILE: MSMg01no361_f01.b1 PHD_FILE: MSMg01no361_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:19 2005CHROMAT_FILE: MSMg01no361_f01.g1 PHD_FILE: MSMg01no361_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGA
TTTTAGCTGGAAAGAACCCAGATGTCAGAGTACAAGTACAGAGCTCTTGA
TTCTAGCTACATATGTATCAAAAGATGGCCTAATCGGCCATCACTGGAAA
GAGAGGCCCATTGGACACACAAACTTTATATGCCCCAGTACAGGGGAACG
CCAGGGCCAAAAAAATGGGAATGAGTGGGTAGGGAAGTGGGGGGGGGAGG
NTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGTTTTTTTTTTTT
TTTTNTTTTTTTTTTNTTTNTTTTTTTTTTGTTNTTTTTTTTATTTGTTT
TTTTTTTTTTTTTTTTTTTTTTTGTTCTTATTTTTTTTGTCTCATACTTT
TAACCCTATTAAATCCCTTCCCCTTTTCCACACCTCCTATTTTCATTCCT
CTTTTCCTATCATATACCCTATTAAATATCCTAAATCCTTTTTATTATAT
CCCTTCTTCCCTTAAGGATTCCATTATAATCTACTTATTCTTGCCATCCA
TTTCACTACATCATCTACCACTAATCAATCTCTACTTCTTTTCCTACTTC
CTTCTCCTTCCTTTTTTCTCTCCCCTTTTTCTTCCTTCATTTTTCCTCCC
CCTCCCTTTATTAATTTTTGCTCCCCTCCCCCCTTCTTATTTTCATCCTT
CCCATTCTTTCTCCCTTCCCCCGTACTCCCACCTTATATATCCATATACT
TCTTCCCTTCCCTATCCCACCCTC
CCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCCTTGCCTAAAGGGGATAA
ACTTCAGGACAGAGACACTCCATGGAAACACAGCAGCTTTTACTCTAAGG
TACTAACAAGCCTTACCTTCAAGATTTCTCCATCTGCATAAAGTACATAC
ATGGTTACTTCAATATTCTTTTGTACACTCTTTCCCCCTCTTTCAAAGTC
TCCCTTCTCCAGTGTTAGGTACAAATCATTGCGGATATCACCTGTTGAGG
AGGGAAATGCAATGTGCTCGCGACCACAGACAGCACGGTGCCCCAGCTGC
ATGGAACATCAGGCTAGCATTTGGGTCCTCGGGGCATTCCAAGCTTGGTT
AATAACAATGGACTGTCCACCAACACCAGTGCGGCAGTACTCAGGTTAGT
TATGTATTCTCTAAGTTCTAAAGGTGTTCGCTACAGCTTACTTAGAGAAT
CTTAGCTCGGATTAATGGTGTTCACACTGCTCAGTCTCTACCCTCCAAGA
TGGCTGTAGTATAAGCCCCTCAAAGAAGGAAGATTCTAGAACTAATTTTA
ATGATGTCTGTCTTGCTAGTAGTCCCTTTTATTTCCCCTAAGAGAATCTT
CTTTTATAGGTTTCTTTTTAACACTCTCATAACTTCACAGTCCGAAAAAA
GGAAACACTACTTCTTTCTTGGAAATTTATTCAAATATGTTTTGTTACCT
GTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_f01.g1 MSMg01no361_f01.g1 CHROMAT_FILE:
MSMg01no361_f01.g1 PHD_FILE: MSMg01no361_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:19 2005
         (565 letters)



>mm_chr9_106898938_106899902
          Length = 965

 Score = 1093 bits (565), Expect = 0.0
 Identities = 565/565 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agccttgcctaaaggggataaacttcaggacagagacactccatggaaacacagcagctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agccttgcctaaaggggataaacttcaggacagagacactccatggaaacacagcagctt 260

                                                                       
Query: 61  ttactctaaggtactaacaagccttaccttcaagatttctccatctgcataaagtacata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttactctaaggtactaacaagccttaccttcaagatttctccatctgcataaagtacata 320

                                                                       
Query: 121 catggttacttcaatattcttttgtacactctttccccctctttcaaagtctcccttctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catggttacttcaatattcttttgtacactctttccccctctttcaaagtctcccttctc 380

                                                                       
Query: 181 cagtgttaggtacaaatcattgcggatatcacctgttgaggagggaaatgcaatgtgctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagtgttaggtacaaatcattgcggatatcacctgttgaggagggaaatgcaatgtgctc 440

                                                                       
Query: 241 gcgaccacagacagcacggtgccccagctgcatggaacatcaggctagcatttgggtcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcgaccacagacagcacggtgccccagctgcatggaacatcaggctagcatttgggtcct 500

                                                                       
Query: 301 cggggcattccaagcttggttaataacaatggactgtccaccaacaccagtgcggcagta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cggggcattccaagcttggttaataacaatggactgtccaccaacaccagtgcggcagta 560

                                                                       
Query: 361 ctcaggttagttatgtattctctaagttctaaaggtgttcgctacagcttacttagagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctcaggttagttatgtattctctaagttctaaaggtgttcgctacagcttacttagagaa 620

                                                                       
Query: 421 tcttagctcggattaatggtgttcacactgctcagtctctaccctccaagatggctgtag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcttagctcggattaatggtgttcacactgctcagtctctaccctccaagatggctgtag 680

                                                                       
Query: 481 tataagcccctcaaagaaggaagattctagaactaattttaatgatgtctgtcttgctag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tataagcccctcaaagaaggaagattctagaactaattttaatgatgtctgtcttgctag 740

                                    
Query: 541 tagtcccttttatttcccctaagag 565
           |||||||||||||||||||||||||
Sbjct: 741 tagtcccttttatttcccctaagag 765


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space:   530025
Effective search space used:   530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)