BAC Information

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BAC

Clone NameMSMg01-361F10
Chromosome9 (Build37)
Map Location 52,230,430 - 52,404,780
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042854, LOC640374, LOC668070, Arhgap20, LOC629554, LOC100043409, Fdx1, EG629557, Rdx, 9830163H01Rik, Zc3h12c, LOC100042876
Downstream geneAI593442, Gm1715, Ddx10, Exph5, Kdelc2, 4930550C14Rik, Atm, Npat, Acat1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361F10.T7 (MSMg01no361_f10.b1)MSMg01-361F10.TJ (MSMg01no361_f10.g1)
ACCAG470296AG470297
length758774
length of high quality
(start - end)		639 (47 - 685)433 (79 - 511)
definitionCHROMAT_FILE: MSMg01no361_f10.b1 PHD_FILE: MSMg01no361_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:21 2005CHROMAT_FILE: MSMg01no361_f10.g1 PHD_FILE: MSMg01no361_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,404,149 - 52,404,780)(52,230,430 - 52,230,813)
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGTCATTCACTTACTAACTAGGTGTGGTGCTGAGTGACAGATCT
GACAAAGAAATGGGAATAGACAAGTTCTCTGACTTTGAAGTTTAAAATAC
AGTGGATTCAGAGAGAGCAATTGGGAAGCCGTTGTGGTGCTCAGCAAGCT
TGGTGGGAATGAGAGAATACAACACTGAAGATGAGGCAGAGAGAGGGGGA
TCTAATGGACATTACTGAGTGTGTGTCATGAAGAGTTGAGAGAATTCCAT
GAAAATATCCTTTCTAACATGGACTGCAGGTGCATGGTGACAACTTTGCT
GATGTGGGGGTCATTGTAAAAGAGCAGATGAGGCAGGCAAGAAGCTAAAC
AAGTTCCATTTTCTCAGTGTGGAAACTAATCACTGGCTGTTTGTTTTAAT
CAGCTATATTTGACAATTGTTTTATGCAATTGTTTGAAGAACTGCACACA
TATGTGATGATAAAGATGAAGCATTTCAAGTGTTTTCTGGTCTGCACCAC
TGCAGTTCTAATGTGGTTTAGTAATCCCATTCTTTATCTTTTCTCATAGG
TTTCTGATGGTCAAGGAAGAAGTTCCCCCTTTCCCTCCTAGAAGTGAGGA
AATGTTTATTCAAATGATATCACCTATACTGGTTTTCTTTAGAGATTTTT
AGGCCATTGATTAAATTAAGAGTATTAACATTTCACAGTGTTAAAGGCAT
GGGCTGCA

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCACTAGGGCAGCTGCTTT
TTGCTAGACAGATATATCTAGGCAGAAGCCTCTTGCCACACATCATTTGA
GTGGCTGTGTTCTCTGCTTACAATTCAGGTATCCTGCACTATGCACACAG
CCCAATCTTTTCTATTAAGTGTATTGTTCCTTTGAGTTAGGTTCAGGCCT
AAATTAGGCTGACATCAAATGTAGCTGTCCGTTGGTCCTAACACACATGG
TATAGATTCCTCTTCTCAAGAGTGAGAGCCAGAATGCTTTGTGTGACTGT
GGAATGAAGATGACTGTGTAAGCTTCTCCCACCGGCTTCCATTTCCCTGC
TCATCAGCTCTGACGGAGTCTGCCTTCAGTTTTAATCATGTTAGGGTTAG
TTCCAAATGCTGATATCAAGACACAGCAAAGCCTCAACATAATAACTGCA
GGAGTCTGTGGNCCTTGGAGAGATGAATGAGGCAGATCTGACTCACTTTA
TTTGAAAATAACTTTTCTGATACATGAAATTGCTGTAATTTNACTAATAC
CAGAACAGGTGGGAGAAATTAATGACAAATCCCCTACCCATTTTCCTTCC
ATTTGTGTGGGGTTGACAATTTGAAGTACATAATTGTTTTGAACTGAAAA
AAAAAGGGGCCCTTAAAGAGGTCTCGGTGGTTCTCAGGCAAAAAAATTTT
TGTTTTTGAGGGAAGGCCCACCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_f10.b1 MSMg01no361_f10.b1 CHROMAT_FILE:
MSMg01no361_f10.b1 PHD_FILE: MSMg01no361_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:21 2005
         (639 letters)



>mm_chr9_52403945_52404983
          Length = 1039

 Score = 1191 bits (616), Expect = 0.0
 Identities = 628/632 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtcattcacttactaactaggtgtggtgctgagtgacagatctgacaaagaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 gaattcagtcattcacttactaactaggtgtggtgctgagtgacagatctgacaaagaaa 777

                                                                       
Query: 65  tgggaatagacaagttctctgactttgaagtttaaaatacagtggattcagagagagcaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 tgggaatagacaagttctctgactttgaagtttaaaatacagtggattcagagagagcaa 717

                                                                       
Query: 125 ttgggaagccgttgtggtgctcagcaagcttggtgggaatgagagaatacaacactgaag 184
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 716 ttgggaagccgttgtggtgctcagcaagcttggtgggaacgagagaatacaacactgaag 657

                                                                       
Query: 185 atgaggcagagagagggggatctaatggacattactgagtgtgtgtcatgaagagttgag 244
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 atgaggcagagagaaggggatctaatggacattactgagtgtgtgtcatgaagagttgag 597

                                                                       
Query: 245 agaattccatgaaaatatcctttctaacatggactgcaggtgcatggtgacaactttgct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 agaattccatgaaaatatcctttctaacatggactgcaggtgcatggtgacaactttgct 537

                                                                       
Query: 305 gatgtgggggtcattgtaaaagagcagatgaggcaggcaagaagctaaacaagttccatt 364
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 536 gatgtgggggtcattgtaaaagagcagatgaggcaggcaagaagctaaacgagttccatt 477

                                                                       
Query: 365 ttctcagtgtggaaactaatcactggctgtttgttttaatcagctatatttgacaattgt 424
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 476 ttctcagtgtggaaactaatcactggctgtttgttttaatcagctacatttgacaattgt 417

                                                                       
Query: 425 tttatgcaattgtttgaagaactgcacacatatgtgatgataaagatgaagcatttcaag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tttatgcaattgtttgaagaactgcacacatatgtgatgataaagatgaagcatttcaag 357

                                                                       
Query: 485 tgttttctggtctgcaccactgcagttctaatgtggtttagtaatcccattctttatctt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tgttttctggtctgcaccactgcagttctaatgtggtttagtaatcccattctttatctt 297

                                                                       
Query: 545 ttctcataggtttctgatggtcaaggaagaagttccccctttccctcctagaagtgagga 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ttctcataggtttctgatggtcaaggaagaagttccccctttccctcctagaagtgagga 237

                                           
Query: 605 aatgtttattcaaatgatatcacctatactgg 636
           ||||||||||||||||||||||||||||||||
Sbjct: 236 aatgtttattcaaatgatatcacctatactgg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no361_f10.g1 MSMg01no361_f10.g1 CHROMAT_FILE:
MSMg01no361_f10.g1 PHD_FILE: MSMg01no361_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:21 2005
         (433 letters)



>mm_chr9_52230181_52231013
          Length = 833

 Score =  673 bits (348), Expect = 0.0
 Identities = 375/384 (97%)
 Strand = Plus / Plus

                                                                       
Query: 50  gcctcttgccacacatcatttgagtggctgtgttctctgcttacaattcaggtatcctgc 109
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gcctcttgccacacatcatttgagtggctgtgttctctgcttacaattcaggtatcctgc 309

                                                                       
Query: 110 actatgcacacagcccaatcttttctattaagtgtattgttcctttgagttaggttcagg 169
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 310 actatgcacacagcccaatcttttctattaagtgcattgttcctttgagttaggttcagg 369

                                                                       
Query: 170 cctaaattaggctgacatcaaatgtagctgtccgttggtcctaacacacatggtatagat 229
           ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 370 cctaaattaggctgacatcaaatgtagctatccgttggtcctaacacgcatggtatagat 429

                                                                       
Query: 230 tcctcttctcaagagtgagagccagaatgctttgtgtgactgtggaatgaagatgactgt 289
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 430 tcctcttctcaagagtgagagccagaatgctttgtgtgattgtggaatgaagatgactgt 489

                                                                       
Query: 290 gtaagcttctcccaccggcttccatttccctgctcatcagctctgacggagtctgccttc 349
            |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ataagcttctcccactggcttccatttccctgctcatcagctctgacggagtctgccttc 549

                                                                       
Query: 350 agttttaatcatgttagggttagttccaaatgctgatatcaagacacagcaaagcctcaa 409
           ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 550 agttttaatcacgttagggttagttccaaacgctgatatcaagacacagcaaagcctcaa 609

                                   
Query: 410 cataataactgcaggagtctgtgg 433
           |||||||||||||||| |||||||
Sbjct: 610 cataataactgcaggaatctgtgg 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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