Query= MSMg01no361_p22.b1 MSMg01no361_p22.b1 CHROMAT_FILE:
MSMg01no361_p22.b1 PHD_FILE: MSMg01no361_p22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:12 2005
(492 letters)
>mm_chr9_59499404_59500299
Length = 896
Score = 861 bits (445), Expect = 0.0
Identities = 481/495 (97%), Gaps = 6/495 (1%)
Strand = Plus / Plus
Query: 4 ggaattcactttatataccaggctgtctttgaactca--gaggtctgcctgcctctgcct 61
||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 202 ggaattcactttatagaccaggctgtctttgaactcacagaggtctgcctgcctctgcct 261
Query: 62 ccctagtgctgtgattaaaggtgggcacaacaccatgcctggcaaaagcccagctttcca 121
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ctctagtgctgtgattaaaggtgggcacaacaccatgcctggcaaaagcccagctttcca 321
Query: 122 atgataacaatttcaaattctactatagctattgctttcagtaaactagttattgtcttc 181
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 322 gtgataacaatttcaaattctactatagctattgctttcaataaactagttattgtcttc 381
Query: 182 tgtgacctttattgtatgtcacaacacctt---acctaggtatcttacttgtgttgtggt 238
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 382 tgtgacctttattgtatgtcacaacaccttcttacctaggtatcttacttgtgttgtggt 441
Query: 239 tcctgacattttgaacaagtcaatactactcttaaagacccttcctgaagagcctacttc 298
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 442 tcctgacattttgaacaagtcaatactactcttaaagacccttcctgaagaacctacttc 501
Query: 299 attatcttccta-gtccttatgactagtacattataaatgactgtggtggggttcttcta 357
|||||||||||| |||||||||||||||||||||||||||||| |||| |||||| ||||
Sbjct: 502 attatcttcctaagtccttatgactagtacattataaatgactatggtagggttcatcta 561
Query: 358 cagtctcagcttatcttctgggggctaaggcaggagaaccagttaagcccaggatttcaa 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cagtctcagcttatcttctgggggctaaggcaggagaaccagttaagcccaggatttcaa 621
Query: 418 aaccaatgtgaacaactgaccaagaatcccatctcaaaaaggaaatagcgagtatattct 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aaccaatgtgaacaactgaccaagaatcccatctcaaaaaggaaatagcgagtatattct 681
Query: 478 aacactcttctaaga 492
|||||||||||||||
Sbjct: 682 aacactcttctaaga 696
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 896
Length adjustment: 10
Effective length of query: 482
Effective length of database: 886
Effective search space: 427052
Effective search space used: 427052
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no361_p22.g1 MSMg01no361_p22.g1 CHROMAT_FILE:
MSMg01no361_p22.g1 PHD_FILE: MSMg01no361_p22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:12 2005
(472 letters)
>mm_chr9_59670512_59671386
Length = 875
Score = 895 bits (463), Expect = 0.0
Identities = 471/475 (99%), Gaps = 3/475 (0%)
Strand = Plus / Minus
Query: 1 aggttgctgatggatactgttgcctatttttttctcatactcacagtgagaattagcacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 aggttgctgatggatactgttgcctatttttttctcatactcacagtgagaattagcacc 616
Query: 61 ---aaaaaaaaaaaaatcagaacagacagatttgataaacttgtaattcaggcaaaaaaa 117
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 aaaaaaaaaaaaaaaatcagaacagacagatttgataaacttgtaattcaggcaaaaaaa 556
Query: 118 gatcacatttcaagttaaagcaaagaactatttggcaccaagtggattccatggtgataa 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gatcacatttcaagttaaagcaaagaactatttggcaccaagtggattccatggtgataa 496
Query: 178 aaggcattgcaggaactggctaacttccaggacactgaaggctcacacatatagaagaga 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aaggcattgcaggaactggctaacttccaggacactgaaggctcacacatatagaagaga 436
Query: 238 ttattcaaacagagccttctacaaaactgtttccccaagaattgattacccatgactggt 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ttattcaaacagagccttctacaaaactgtttccccaagaattgattacccatgactggt 376
Query: 298 gtccaggtactacagccaaggataagcaggcccaaacaggaaattttgcacaaaatgaag 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gtccaggtactacagccaaggataagcaggcccaaacaggaaattttgcacaaaatgaag 316
Query: 358 tttttagtgtcatccacataatgaaggttttacaaagatataaaatatgagttgcaggat 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 315 tttttagtgtcatccacataatgaaggttttacaaagatataaaatatgagttgcgggat 256
Query: 418 tatgagaaattctaccagatttctcttagaaactttgatgtttaaaaaaaaaagt 472
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tatgagaaattctaccagatttctcttagaaactttgatgtttaaaaaaaaaagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 875
Length adjustment: 10
Effective length of query: 462
Effective length of database: 865
Effective search space: 399630
Effective search space used: 399630
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
