Query= MSMg01no362_c12.b1 MSMg01no362_c12.b1 CHROMAT_FILE:
MSMg01no362_c12.b1 PHD_FILE: MSMg01no362_c12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:25 2005
(504 letters)
>mm_chr9_19728015_19728918
Length = 904
Score = 920 bits (476), Expect = 0.0
Identities = 497/504 (98%)
Strand = Plus / Plus
Query: 1 gactattacaaaaacattgattattgactacatggtaaggtagaagagggggctgagcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gactattacaaaaacattgattattgactacatggtaaggtagaagagggggctgagcaa 260
Query: 61 ctctcatcttttctgggagcatacagaaatggcctctgtgactctctcttttatgagtag 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 ctctcatcttttctgggagcatacagaaatggcctatgtgactctctcttttatgagtag 320
Query: 121 gatgagtttcttctgtactgtgttctggcatgtaacaccaccatggaaaggagaggagac 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gataagtttcttctgtactgtgttctggcatgtaacaccaccatggaaaggagaggagac 380
Query: 181 tggcaagtttgcagttctgggagatatgcatgaccttttctgaatgcagttttgaggttt 240
|||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 381 tggcaagtttacagttctgggagataagcatgacctgttctgaatgcagttttgaggttt 440
Query: 241 caagcttctatcaagtaagtgttagtcatttaagccacagtcatgaaaatgaagatattc 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caagcttctgtcaagtaagtgttagtcatttaagccacagtcatgaaaatgaagatattc 500
Query: 301 tttgttgaagaaagttcagaaattgtcaatgatttttgtcaccaggtattggtttacaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttgttgaagaaagttcagaaattgtcaatgatttttgtcaccaggtattggtttacaga 560
Query: 361 tatatgttgtctggtaacaagattctaatgctgggatgtttggattcctgaaatatattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatatgttgtctggtaacaagattctaatgctgggatgtttggattcctgaaatatattt 620
Query: 421 gtgaaaatgtactaatgtaaacctgctttgttttctgatcactaatttgtggtcttaatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgaaaatgtactaatgtaaacctgctttgttttctgatcactaatttgtggtcttaatt 680
Query: 481 ccataagaaaaaatactctgccag 504
|||||||||| |||||||||||||
Sbjct: 681 ccataagaaacaatactctgccag 704
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space: 441636
Effective search space used: 441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no362_c12.g1 MSMg01no362_c12.g1 CHROMAT_FILE:
MSMg01no362_c12.g1 PHD_FILE: MSMg01no362_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:25 2005
(564 letters)
>mm_chr9_19830222_19831191
Length = 970
Score = 1011 bits (523), Expect = 0.0
Identities = 555/569 (97%), Gaps = 6/569 (1%)
Strand = Plus / Minus
Query: 1 ccccttctctcactaagtttgcaccccactttcctgtcattatgtattgttttggtttgt 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ccccttctctcaataagtttgcaccccactttcctgtcattatgtattgttttggtttgt 564
Query: 61 gatccactgggttagccagggacacaca------catgagtttaaagctatctactgaac 114
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 563 gatccactgggttagccagggacacacacatatgcatgagtttaaagctatctactgaac 504
Query: 115 tgcaagtgacttacagtgcttacatcactgagcacaatgctttttcttagggacttagac 174
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 503 tgcaagcgacttacagtgcttacatcactgagcacaatgctttttcttagagacctagac 444
Query: 175 tggcattagctctggtgtatgggtcaagtccaatgagtcctttctattatggggcttacg 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tggcattagctctggtgtatgggtcaagtccaatgagtcctttctattatggggcttacg 384
Query: 235 ttcataagctgggtcttggtgagggcttgtgagttcaagtgtacgatctccatgttattc 294
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 383 ttcataagctgggtcttggtgagggcttgtgagttcaagtgtactatctccatattattc 324
Query: 295 ctataaaatattattgaataagctgttgaataagttatgggggtattagattcaacctga 354
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttataaaatattattgaataagatgttgaataagttatgggggtattagattcaacctga 264
Query: 355 tttttctgtaacagtttgagagatttggatggatcatattgatttaatagaaaaaggtaa 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tttttctgtaacagtttgagagatttggatggatcatattgatttaatagaaaaaggtaa 204
Query: 415 tcacacttaatcttattattttaatcaagcatgcatctcagcattagttgacaaggattc 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tcacacttaatcttattattttaatcaagcatgcatctcagcattagttgacaaggattc 144
Query: 475 taaagagaagcttctttgaacaattttgagggtaattgtctagtggtataatatttaaga 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 taaagagaagcttctttgaacaattttgagggtaattgtctagtggtataatatttaaga 84
Query: 535 ggcagtatgatagcacttacattttgtaa 563
|||||||||||||||||||||||||||||
Sbjct: 83 ggcagtatgatagcacttacattttgtaa 55
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 970
Length adjustment: 10
Effective length of query: 554
Effective length of database: 960
Effective search space: 531840
Effective search space used: 531840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
